Mir-199-P1b-as

MirGeneDB ID

Mal-Mir-199-P1b-as

Family name

MIR-199 (all species)

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-199-P1a-v1 Mal-Mir-199-P1b-v1 Mal-Mir-199-P2a-v1 Mal-Mir-199-P3-v1

Orthologues

Aca-Mir-199-P1-v1 Ami-Mir-199-P1-v1 Bta-Mir-199-P1-v1 Cfa-Mir-199-P1-v1 Cja-Mir-199-P1-v1 Cli-Mir-199-P1-v1 Cmi-Mir-199-P1-v1 Cpi-Mir-199-P1-v1 Cpo-Mir-199-P1-v1 Dno-Mir-199-P1-v1 Eca-Mir-199-P1-v1 Ete-Mir-199-P1-v1 Gga-Mir-199-P1-v1 Gja-Mir-199-P1-v1 Gmo-Mir-199-P1b-v1 Hsa-Mir-199-P1-v1 Laf-Mir-199-P1-v1 Lch-Mir-199-P1 Loc-Mir-199-P1-v1 Mdo-Mir-199-P1-v1 Mml-Mir-199-P1-v1 Mmr-Mir-199-P1-v1 Mmu-Mir-199-P1-v1 Mun-Mir-199-P1-v1 Neu-Mir-199-P1-v1 Oan-Mir-199-P1-v1 Ocu-Mir-199-P1-v1 Pab-Mir-199-P1-v1 Pbv-Mir-199-P1-v1 Pma-Mir-199-o1 Rno-Mir-199-P1-v1 Sha-Mir-199-P1-v1 Spt-Mir-199-P1 Sto-Mir-199-P1-v1 Tgu-Mir-199-P1-v1 Tni-Mir-199-P1b-v1 Xtr-Mir-199-P1-v1

Node of Origin (locus)

M. albus

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884892.1: 231065-231129 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P1b-as)

Mir-199-P1b-as KV884892.1: 231065-231129 [-] UCSC Ensembl
Mir-199-P1b-v1 KV884892.1: 231069-231129 [+] UCSC Ensembl
Mir-199-P1b-v2 KV884892.1: 231069-231129 [+] UCSC Ensembl
Mir-199-P1b-v3 KV884892.1: 231069-231129 [+] UCSC Ensembl
Mir-214-P2-v1 KV884892.1: 232785-232847 [+] UCSC Ensembl
Mir-214-P2-v2 KV884892.1: 232786-232846 [+] UCSC Ensembl

Seed

AACCAAU

Precursor
(pre-Mir +30nt flank)

AGACUGACAGAAGAGGGUCCAUGCCCAGUCUAACCAAUGUGCAGACUACUGUACACCAGUAUGACAAUGAACAGGUAGUCUGAACACUGGGUGGACGGAGCCGGAGUUAAGAGCCAGGCCUUGUG

Get precursor sequence

Structure

        10           20         30        40         50        60 
AGACUGACAGAAGAGGG---|  AU  -  A     A   A   G        -   ACACCAGU 
                    UCC  GC CC GUCUA CCA UGU CAGACUAC UGU        A
                    AGG  CG GG CAGGU GGU ACA GUCUGAUG ACA        U
GUGUUCCGGACCGAGAAUUG^  C-  A  -     G   C   A        G   AGUAACAG 
   120       110        100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-199-P1b-as_5p

mirBase accession

None

Sequence

0- UAACCAAUGUGCAGACUACUGU -22

Get sequence

Star sequence

Mal-Mir-199-P1b-as_3p*

mirBase accession

None

Sequence

42- AGGUAGUCUGAACACUGGGUGGA -65

Get sequence