MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-199-P3

Family name MIR-199 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-199b
Paralogues Xtr-Mir-199-P1-v1 
Orthologues Aca-Mir-199-P3-v1  Ami-Mir-199-P3-v1  Bta-Mir-199-P3-v1  Cfa-Mir-199-P3-v1  Cja-Mir-199-P3-v1  Cpi-Mir-199-P3-v1  Cpo-Mir-199-P3-v1  Dre-Mir-199-P3-v1  Eca-Mir-199-P3-v1  Ete-Mir-199-P3-v1  Gja-Mir-199-P3-v1  Gmo-Mir-199-P3-v1  Hsa-Mir-199-P3-v1  Laf-Mir-199-P3-v1  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Mal-Mir-199-P3-v1  Mdo-Mir-199-P3-v1  Mml-Mir-199-P3-v1  Mmr-Mir-199-P3-v1  Mmu-Mir-199-P3-v1  Mun-Mir-199-P3-v1  Neu-Mir-199-P3-v1  Ocu-Mir-199-P3-v1  Pab-Mir-199-P3-v1  Pbv-Mir-199-P3-v1  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Tni-Mir-199-P3-v1  Xla-Mir-199-P3a  Xla-Mir-199-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr3: 127964118-127964178 [-] UCSC Ensembl
Seed CCAGUGU
Precursor
(pre-Mir +30nt flank)		 
AAGAUCCCGAGAGGUGGGUGGUCCCGUUCCCCCAGUGUUCAGACUACGUGUUCGUUGGACAGAACCUGAACAGUAGUCUACACACUGGUUAAACUGGGCCAUGCGGUCAACUGCUGCACAU
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Structure
        10          20        30        40        50        60
AAGAUCCCGAGAGGUGG--|      C   CCC       UC       G     GUUGGA 
                   GUGGUCC GUU   CCAGUGU  AGACUAC UGUUC      C
                   UACCGGG CAA   GGUCACA  UCUGAUG ACAAG      A
UACACGUCGUCAACUGGCG^      U   AUU       CA       -     UCCAAG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-199-P3_5p
mirBase accessionMIMAT0003692
Sequence 
0- CCCAGUGUUCAGACUACGUGUUC -23
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Proposed targets TargetScanVert: xtr-miR-199b
Star sequence

Xtr-Mir-199-P3_3p*
mirBase accessionNone
Sequence 
39- ACAGUAGUCUACACACUGGUUA -61
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