| MirGeneDB ID | Xtr-Mir-199-P3 |
|---|
| Family name |
MIR-199 (all species) |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
xtr-mir-199b
|
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| Paralogues |
Xtr-Mir-199-P1-v1
|
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| Orthologues |
Aca-Mir-199-P3-v1
Ami-Mir-199-P3-v1
Bta-Mir-199-P3-v1
Cfa-Mir-199-P3-v1
Cja-Mir-199-P3-v1
Cpi-Mir-199-P3-v1
Cpo-Mir-199-P3-v1
Dre-Mir-199-P3-v1
Eca-Mir-199-P3-v1
Ete-Mir-199-P3-v1
Gja-Mir-199-P3-v1
Gmo-Mir-199-P3-v1
Hsa-Mir-199-P3-v1
Laf-Mir-199-P3-v1
Lch-Mir-199-P3
Loc-Mir-199-P3-v1
Mal-Mir-199-P3-v1
Mdo-Mir-199-P3-v1
Mml-Mir-199-P3-v1
Mmr-Mir-199-P3-v1
Mmu-Mir-199-P3-v1
Mun-Mir-199-P3-v1
Neu-Mir-199-P3-v1
Ocu-Mir-199-P3-v1
Pab-Mir-199-P3-v1
Pbv-Mir-199-P3-v1
Pma-Mir-199-o3
Sha-Mir-199-P3-v1
Tni-Mir-199-P3-v1
Xla-Mir-199-P3a
Xla-Mir-199-P3b
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(xenTro9_add) |
chr3: 127964118-127964178 [-]
UCSC
Ensembl
|
|---|
| Seed |
CCAGUGU |
|---|
Precursor
(pre-Mir +30nt flank) |
AAGAUCCCGAGAGGUGGGUGGUCCCGUUCCCCCAGUGUUCAGACUACGUGUUCGUUGGACAGAACCUGAACAGUAGUCUACACACUGGUUAAACUGGGCCAUGCGGUCAACUGCUGCACAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGAUCCCGAGAGGUGG--| C CCC UC G GUUGGA
GUGGUCC GUU CCAGUGU AGACUAC UGUUC C
UACCGGG CAA GGUCACA UCUGAUG ACAAG A
UACACGUCGUCAACUGGCG^ U AUU CA - UCCAAG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xtr-Mir-199-P3_5p |
| mirBase accession | MIMAT0003692 |
|---|
| Sequence |
0- CCCAGUGUUCAGACUACGUGUUC -23
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: xtr-miR-199b
|
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| Star sequence |
Xtr-Mir-199-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- ACAGUAGUCUACACACUGGUUA -61
Get sequence
|
|---|
