MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-338-o3

Family name MIR-338 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-338-P3 
Orthologues Ebu-Mir-338-P3 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046071.1: 19738758-19738816 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-o3)		 Mir-338-o3 NC_046071.1: 19738758-19738816 [+] UCSC Ensembl
Mir-338-P3 NC_046071.1: 19740631-19740695 [+] UCSC Ensembl
Seed CCAGCAU
Precursor
(pre-Mir +30nt flank)		 
GGUAUUGGAGAGCGUCCGUUCAGUUCCGGCAACAACAUCCUGGUGCUGCCGAGUGGCACCUGAGACUCCAGCAUCAGUGAUUUUGUUGCCGGAACCAGGCACAAGCAACUUCCUCUCCU
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Structure
        10          20        30         40        50         
GGUAUUGGAGAGCGUCC--   CA             C   -|        CC    GGCA 
                   GUU  GUUCCGGCAACAA AUC CUGGUGCUG  GAGU    C
                   CGG  CAAGGCCGUUGUU UAG GACUACGAC  CUCA    C
UCCUCUCCUUCAACGAACA   AC             U   U^        --    GAGU 
       110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-338-o3_5p* (predicted)
mirBase accessionNone
Sequence 
0- AACAACAUCCUGGUGCUGCCGAGU -24
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Mature sequence

Pma-Mir-338-o3_3p
mirBase accessionNone
Sequence 
36- UCCAGCAUCAGUGAUUUUGUUGC -59
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