MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-338-P2-as

Family name MIR-338 (all species)
Species Cow (Bos taurus)
MiRBase ID
Paralogues Bta-Mir-338-P2 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Amniota
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037346.1: 51569630-51569693 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P2-as)		 Mir-338-P2-as NC_037346.1: 51569630-51569693 [-] UCSC Ensembl
Mir-338-P2 NC_037346.1: 51569635-51569693 [+] UCSC Ensembl
Seed CAACAAA
Precursor
(pre-Mir +30nt flank)		 
GGGCAGUCGGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUUGCGUGUGUCAUCACUCAGCACCAGGAUAUUGUUGGGGAGGACGGCCCGUGCGCUGUCCAGGGCUGGCG
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Structure
        10          20         30        40        50        60  
GGGCAGUCGGGAGGCUG--  A-|   C            A   A   A     G   UGCGUG 
                   GC  GCUG CCUCUUCAACAA AUC CUG UGCUG AGU      \
                   UG  CGGC GGAGGGGUUGUU UAG GAC ACGAC UCA      U
GCGGUCGGGACCUGUCGCG  CC^   A            A   -   C     -   CUACUG 
  120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-338-P2-as_5p
mirBase accessionNone
Sequence 
0- UCAACAAAAUCACUGAUGCUGGAGU -25
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Star sequence

Bta-Mir-338-P2-as_3p*
mirBase accessionNone
Sequence 
40- UCAGCACCAGGAUAUUGUUGGGGA -64
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