MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-338-P2

Family name MIR-338 (all species)
Seed CCAGCAU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-338
Paralogues Rno-Mir-338-P2-as 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr10: 109195254-109195311 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P2)		 Mir-338-P2 chr10: 109195254-109195311 [-] UCSC Ensembl
Mir-338-P2-as chr10: 109195254-109195316 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCCCGACGCUGCCCAGGCCGUCCUCCCCAACAAUAUCCUGGUGCUGAGUGGGUGCACAGUGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCAGCUGCCAGCCUCCUGUCCUGCC
Get precursor sequence
Structure
        10          20        30         40         50       
AGCCCCGACGCUGCCCA--   C      CC      U   -        -|   GGGUG 
                   GGC GUCCUC  CAACAA AUC CUGGUGCU GAGU     C
                   UCG CGGGAG  GUUGUU UAG GACUACGA CUCA     A
CCGUCCUGUCCUCCGACCG   A      AA      U   U        C^   GUGAC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-338-P2_5p*
mirBase accessionMIMAT0004646
Sequence 
0- AACAAUAUCCUGGUGCUGAGU -21
Get sequence
Proposed targets microrna.org: MIMAT0004646
TargetScanVert: rno-miR-338-5p
miRDB: MIMAT0004646
Mature sequence

Rno-Mir-338-P2_3p
mirBase accessionMIMAT0000581
Sequence 
35- UCCAGCAUCAGUGAUUUUGUUGA -58
Get sequence
Proposed targets microrna.org: MIMAT0000581
TargetScanVert: rno-miR-338-3p
miRDB: MIMAT0000581