MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-338-P2a

Family name MIR-338 (all species)
Seed CCAGCAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-338-1
Paralogues Gmo-Mir-338-P1  Gmo-Mir-338-P2b 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Xtr-Mir-338-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_2140: 179542-179603 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGUGCGCCCUCUGCUGGUCUCCCCUUGCAACAACAUCCUGGUGCUGAUUGAGUAGUUGUGAUAUAACUCCAGCAUCAGUGAUUUUGUUGCCGGGGGCGAGCCUCACUCUUCCUCCUCCAC
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Structure
        10          20        30         40        50          
CCUGUGCGCCCUCUGCU-  -  U     U       C   -|        AUUGAGUAGUU 
                  GG UC CCCCU GCAACAA AUC CUGGUGCUG           \
                  CC AG GGGGG CGUUGUU UAG GACUACGAC           G
CACCUCCUCCUUCUCACU  G  C     C       U   U^        CUCAAUAUAGU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-338-P2a_5p*
mirBase accessionMIMAT0044177
Sequence 
0- AACAACAUCCUGGUGCUGAUUG -22
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Mature sequence

Gmo-Mir-338-P2a_3p
mirBase accessionMIMAT0044153
Sequence 
39- UCCAGCAUCAGUGAUUUUGUUGC -62
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