Mir-338-P2-as

MirGeneDB ID

Mmu-Mir-338-P2-as

Family name

MIR-338 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-3065

Paralogues

Mmu-Mir-338-P2

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mun-Mir-338-P2e Mun-Mir-338-P2f Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pab-Mir-338-P2 Pab-Mir-338-P2-as Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Amniota

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr11: 120014780-120014841 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-338-P2-as)

Mir-338-P2 chr11: 120014780-120014837 [-] UCSC Ensembl
Mir-338-P2-as chr11: 120014780-120014841 [+] UCSC Ensembl

Seed

CAACAAA

Precursor
(pre-Mir +30nt flank)

GGCAGGGCAGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUCACUGUGCACCCACUCAGCACCAGGAUAUUGUUGGGGAGGACGGCCUGUGCAGCGUUGGAGCUGGUG

Get precursor sequence

Structure

        10         20         30        40        50        60 
GGCAGGGCAGGAGGCUG-   -|   C            A   A   A     G   CACUG 
                  GCA GCUG CCUCUUCAACAA AUC CUG UGCUG AGU     U
                  UGU CGGC GGAGGGGUUGUU UAG GAC ACGAC UCA     G
GUGGUCGAGGUUGCGACG   C^   A            A   -   C     -   CCCAC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-338-P2-as_5p

mirBase accession

MIMAT0014836

Sequence

0- UCAACAAAAUCACUGAUGCUGGAGU -25

Get sequence

Proposed targets

TargetScanVert: mmu-miR-3065-5p
miRDB: MIMAT0014836

Star sequence

Mmu-Mir-338-P2-as_3p*

mirBase accession

MIMAT0014837

Sequence

39- UCAGCACCAGGAUAUUGUUGGGG -62

Get sequence

Proposed targets

TargetScanVert: mmu-miR-3065-3p
miRDB: MIMAT0014837