Mir-338-P2

MirGeneDB ID

Pab-Mir-338-P2

Family name

MIR-338 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-338-P2-as

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054698.2: 96593343-96593401 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-338-P2)

Mir-338-P2 CM054698.2: 96593343-96593401 [-] UCSC Ensembl
Mir-338-P2-as CM054698.2: 96593343-96593405 [+] UCSC Ensembl

Seed

CCAGCAU

Precursor
(pre-Mir +30nt flank)

AGCCCCAGACGCCGCACGGCCGUCCUCUCCAACAAUAUCCUGGUGCUGAGUGAUGACUCAGGCAACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCAGCUGCCAGCCUCCCGACCUGCC

Get precursor sequence

Structure

        10          20        30         40         50        
AGCCCCAGACGCCGCAC--   C       C      U   -        -|   GAUGAC 
                   GGC GUCCUCU CAACAA AUC CUGGUGCU GAGU      \
                   UCG CGGGAGA GUUGUU UAG GACUACGA CUCA      U
CCGUCCAGCCCUCCGACCG   A       A      U   U        C^   ACGGAC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-338-P2_5p*

mirBase accession

None

Sequence

0- AACAAUAUCCUGGUGCUGAGU -21

Get sequence

Mature sequence

Pab-Mir-338-P2_3p

mirBase accession

None

Sequence

36- UCCAGCAUCAGUGAUUUUGUUGA -59

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