Mir-338-P2-as

MirGeneDB ID

Cfa-Mir-338-P2-as

Family name

MIR-338 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

Paralogues

Cfa-Mir-338-P2

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pab-Mir-338-P2 Pab-Mir-338-P2-as Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Amniota

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr9: 918648-918710 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-338-P2-as)

Mir-338-P2-as chr9: 918648-918710 [-] UCSC Ensembl
Mir-338-P2 chr9: 918652-918710 [+] UCSC Ensembl

Seed

CAACAAA

Precursor
(pre-Mir +30nt flank)

GGCAGGUCGGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUUGCAUGUGUCAUCACUCAGCACCAGGAUAUUGUUGGGGAGGACGGCCCGUGCGGCGUCCGGGGCCGGU

Get precursor sequence

Structure

        10         20         30        40        50        60  
GGCAGGUCGGGAGGCUG-  A-|   C            A   A   A     G   UGCAUG 
                  GC  GCUG CCUCUUCAACAA AUC CUG UGCUG AGU      \
                  UG  CGGC GGAGGGGUUGUU UAG GAC ACGAC UCA      U
UGGCCGGGGCCUGCGGCG  CC^   A            A   -   C     -   CUACUG 
 120       110       100        90         80         70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-338-P2-as_5p

mirBase accession

None

Sequence

0- UCAACAAAAUCACUGAUGCUGGAGU -25

Get sequence

Star sequence

Cfa-Mir-338-P2-as_3p*

mirBase accession

None

Sequence

40- UCAGCACCAGGAUAUUGUUGGGG -63

Get sequence