| MirGeneDB ID | Gga-Mir-338-P2 |
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| Family name |
MIR-338 (all species) |
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| Seed |
CCAGCAU |
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| Species |
Chicken (Gallus gallus) |
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| MiRBase ID |
gga-mir-338
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| Paralogues |
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| Orthologues |
Aca-Mir-338-P2
Ami-Mir-338-P2
Bta-Mir-338-P2
Bta-Mir-338-P2-as
Cfa-Mir-338-P2
Cfa-Mir-338-P2-as
Cli-Mir-338-P2
Cmi-Mir-338-P2
Cpi-Mir-338-P2
Cpi-Mir-338-P2-as
Cpo-Mir-338-P2
Dno-Mir-338-P2
Dre-Mir-338-P2a
Dre-Mir-338-P2b
Ebu-Mir-338-o2
Ete-Mir-338-P2
Ete-Mir-338-P2-as
Gja-Mir-338-P2
Gmo-Mir-338-P2a
Gmo-Mir-338-P2b
Hsa-Mir-338-P2
Hsa-Mir-338-P2-as
Lch-Mir-338-P2
Loc-Mir-338-P2
Mal-Mir-338-P2a
Mal-Mir-338-P2b
Mdo-Mir-338-P2
Mml-Mir-338-P2
Mml-Mir-338-P2-as
Mmu-Mir-338-P2
Mmu-Mir-338-P2-as
Mun-Mir-338-P2e
Mun-Mir-338-P2f
Oan-Mir-338-P2
Ocu-Mir-338-P2
Pbv-Mir-338-P2
Rno-Mir-338-P2
Rno-Mir-338-P2-as
Sha-Mir-338-P2
Spt-Mir-338-P2
Sto-Mir-338-P2
Tgu-Mir-338-P2
Tgu-Mir-338-P2-as
Tni-Mir-338-P2a
Tni-Mir-338-P2b
Xla-Mir-338-P2c
Xla-Mir-338-P2d
Xtr-Mir-338-P2
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(Gallus_gallus.GRCg6a) |
18: 9290670-9290730 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUGCCCGUCCCACCUUGCUCCUCCUGCCCAACAAUAUCCUGGUGCUGAGUGAGUUGCACACAGAGACUCCAGCAUCAGUGAUUUUGUUGAGGAAGGGGAGCGCUGCAUCGGGGCCACCAG
Get precursor sequence
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| Structure | 10 20 30 40 50
UGUGCCCGUCCCACCUU-- U G - U - -| GAGUUGC
GCUCC CCU CC CAACAA AUC CUGGUGCU GAGU \
CGAGG GGA GG GUUGUU UAG GACUACGA CUCA A
GACCACCGGGGCUACGUCG - A A U U C^ GAGACAC
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Ch |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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| Star sequence |
Gga-Mir-338-P2_5p* |
| mirBase accession | MIMAT0037551 |
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| Sequence |
0- AACAAUAUCCUGGUGCUGAGU -21
Get sequence
|
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| Mature sequence |
Gga-Mir-338-P2_3p |
| mirBase accession | MIMAT0037552 |
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| Sequence |
38- UCCAGCAUCAGUGAUUUUGUUGA -61
Get sequence
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