MirGeneDB 3.0
MirGeneDB ID

Oan-Mir-338-P2

Family name MIR-338 (all species)
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)		 NW_021638079.1: 3139464-3139523 [-]
Seed CCAGCAU
Precursor
(pre-Mir +30nt flank)		 
CCCGGCCUCCGCCCCCCGGCCUCCCCCGCCAACAAUAUCCUGACGCUGAGUGACUGCGCUCGGAGACUCCAGCAUCAGUGAUUUUGUUGAAGGGGGCGGCUACCAGCCUCGCGGACGGCC
Get precursor sequence
Structure
        10          20        30         40         50        
CCCGGCCUCCGCCCCCC--    U     GC      U   -    C   -|   GACUGC 
                   GGCC CCCCC  CAACAA AUC CUGA GCU GAGU      G
                   UCGG GGGGG  GUUGUU UAG GACU CGA CUCA      C
CCGGCAGGCGCUCCGACCA    C     AA      U   U    A   C^   GAGGCU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Ce He Ki Te
Star sequence

Oan-Mir-338-P2_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGACGCUGAGU -21
Get sequence
Mature sequence

Oan-Mir-338-P2_3p
mirBase accessionNone
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGA -60
Get sequence