MirGeneDB ID | Pbv-Mir-338-P2 |
Family name |
MIR-338 (all species) |
Seed |
CCAGCAU |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
pbv-mir-338
|
Paralogues |
|
Orthologues |
Aca-Mir-338-P2
Ami-Mir-338-P2
Bta-Mir-338-P2
Bta-Mir-338-P2-as
Cfa-Mir-338-P2
Cfa-Mir-338-P2-as
Cli-Mir-338-P2
Cmi-Mir-338-P2
Cpi-Mir-338-P2
Cpi-Mir-338-P2-as
Cpo-Mir-338-P2
Dno-Mir-338-P2
Dre-Mir-338-P2a
Dre-Mir-338-P2b
Ebu-Mir-338-o2
Ete-Mir-338-P2
Ete-Mir-338-P2-as
Gga-Mir-338-P2
Gja-Mir-338-P2
Gmo-Mir-338-P2a
Gmo-Mir-338-P2b
Hsa-Mir-338-P2
Hsa-Mir-338-P2-as
Lch-Mir-338-P2
Loc-Mir-338-P2
Mal-Mir-338-P2a
Mal-Mir-338-P2b
Mdo-Mir-338-P2
Mml-Mir-338-P2
Mml-Mir-338-P2-as
Mmu-Mir-338-P2
Mmu-Mir-338-P2-as
Mun-Mir-338-P2e
Mun-Mir-338-P2f
Oan-Mir-338-P2
Ocu-Mir-338-P2
Rno-Mir-338-P2
Rno-Mir-338-P2-as
Sha-Mir-338-P2
Spt-Mir-338-P2
Sto-Mir-338-P2
Tgu-Mir-338-P2
Tgu-Mir-338-P2-as
Tni-Mir-338-P2a
Tni-Mir-338-P2b
Xla-Mir-338-P2c
Xla-Mir-338-P2d
Xtr-Mir-338-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE952972.1: 1131002-1131062 [+]
|
Precursor (pre-Mir +30nt flank) |
CUCUCUUCUUAGAACCUGUUCCUCCCCGUCAACAAUAUCCUGGUGCUGAGUGAGUGGCACUCAGAGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGGGUGCUUUACCAUCUCCUGGACCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCUCUUCUUAGAACCU-- U CCG U - -| GAGUGGC
GU CCUCC UCAACAA AUC CUGGUGCU GAGU \
CG GGGGG AGUUGUU UAG GACUACGA CUCA A
ACCAGGUCCUCUACCAUUU U AGA U U C^ GAGACUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pbv-Mir-338-P2_5p* |
mirBase accession | MIMAT0039041 |
Sequence |
0- AACAAUAUCCUGGUGCUGAGU -21
Get sequence
|
Mature sequence |
Pbv-Mir-338-P2_3p |
mirBase accession | MIMAT0039042 |
Sequence |
38- UCCAGCAUCAGUGAUUUUGUUGA -61
Get sequence
|