Mir-338-P2

MirGeneDB ID

Loc-Mir-338-P2

Family name

MIR-338 (all species)

Seed

CCAGCAU

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-338-P1

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Lch-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Oan-Mir-338-P2 Ocu-Mir-338-P2 Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG10: 37463978-37464038 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGCCUCCAGACAUCCCUGGUUUCUCCCUGUAACAAUAUCCUGGUGCUGCCCGAGUGUUUCUCACAGACUCCAGCAUCAGUGAUUUUGUUGCAGGGGGGAAUCCUUGAGCUCCAGGCACCAU

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Structure

        10          20        30         40        50        60 
UGCCUCCAGACAUCCCU--                  U   -|        CCC    GUUUC 
                   GGUUUCUCCCUGUAACAA AUC CUGGUGCUG   GAGU     \
                   CUAAGGGGGGACGUUGUU UAG GACUACGAC   CUCA     U
UACCACGGACCUCGAGUUC                  U   U^        ---    GACAC 
 .       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-338-P2_5p*

mirBase accession

None

Sequence

0- AACAAUAUCCUGGUGCUGCCCGAGU -25

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Mature sequence

Loc-Mir-338-P2_3p

mirBase accession

None

Sequence

38- UCCAGCAUCAGUGAUUUUGUUGC -61

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