MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-338-P2-as

Family name MIR-338 (all species)
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID
Paralogues Cpi-Mir-338-P1  Cpi-Mir-338-P2 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Amniota
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584464: 13339451-13339515 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P2-as)		 Mir-338-P2-as JH584464: 13339451-13339515 [-] UCSC Ensembl
Mir-338-P2 JH584464: 13339455-13339515 [+] UCSC Ensembl
Seed CAGCACC
Precursor
(pre-Mir +30nt flank)		 
GACGGCCCCAGAAGCCAGCGCUCGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUCUCCGUGUGCAACUCACUCAGCACCAGGAUAUUGUUGGGGAGGAGAAGCCAGAGGGCGGUGGGUGGACCA
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Structure
        10            20        30        40        50        60   
GACGGCCCCAGAAGCCA----| GC  GC            A   A   A     G  UCUCCGUG 
                     GC  UC  CCUCUUCAACAA AUC CUG UGCUG AG        \
                     CG  AG  GGAGGGGUUGUU UAG GAC ACGAC UC        U
ACCAGGUGGGUGGCGGGAGAC^ A-  A-            A   -   C     -  ACUCAACG 
   120       110        100         90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Te Te Te To
Star sequence

Cpi-Mir-338-P2-as_5p*
mirBase accessionNone
Sequence 
0- UCAACAAAAUCACUGAUGCUGGAG -24
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Mature sequence

Cpi-Mir-338-P2-as_3p
mirBase accessionNone
Sequence 
42- UCAGCACCAGGAUAUUGUUGGGG -65
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