MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-338-P2

Family name MIR-338 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-338-P1 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)		 JH126581.1: 1083401-1083462 [+] Ensembl
Seed CCAGCAU
Precursor
(pre-Mir +30nt flank)		 
UCUGUCCACCUGGCCUUGUUCACCUGCUACAACAAUAUCCUGGUGCUGAAUGAGUGGGACUUGGGAGACUCCAGCAUCAGUGAUUUUGUUGCGGAGGGUGAUCACUUGCAUCUGACUUCAGU
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Structure
        10          20        30         40        50        60 
UCUGUCCACCUGGCCUU-- U      G UA      U   -|        AAU    GGGAC 
                   G UCACCU C  CAACAA AUC CUGGUGCUG   GAGU     U
                   C AGUGGG G  GUUGUU UAG GACUACGAC   CUCA     U
UGACUUCAGUCUACGUUCA U      A GC      U   U^        ---    GAGGG 
120       110       100        90        80           70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Lch-Mir-338-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGGUGCUGAAUGAGU -25
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Mature sequence

Lch-Mir-338-P2_3p (predicted)
mirBase accessionNone
Sequence 
39- UCCAGCAUCAGUGAUUUUGUUGC -62
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