MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-34-P5

Family name MIR-34 (all species)
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-34-P6  Bla-Mir-34-P7  Bla-Mir-34-P8 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bfl-Mir-34-P5a  Bfl-Mir-34-P5b  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000034: 211239-211300 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P5)		 Mir-34-P7 Sc0000034: 200473-200534 [-] Ensembl
Mir-34-P6 Sc0000034: 210892-210948 [-] Ensembl
Mir-34-P5 Sc0000034: 211239-211300 [-] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
UUACAAUAGACUAUACAUCGUGCAGCCAUCUGGCAGUGUUGUUAGCUGGCCGCUAGGAGUCGCUCUUUAGGCCCUCUAUCAACGCUGCCCUACGGACGCACGACACGUCAUCAUGUUGAAUU
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Structure
        10          20        30        40        50        60
UUACAAUAGACUAUACA--|     AG  AUCU          U   CU    GCUAGGAG 
                   UCGUGC  CC    GGCAGUGUUG UAG  GGCC        U
                   AGCACG  GG    CCGUCGCAAC AUC  CCGG        C
UUAAGUUGUACUACUGCAC^     CA  CAUC          U   UC    AUUUCUCG 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-34-P5_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUUGUUAGCUGGCCG -22
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Co-mature sequence

Bla-Mir-34-P5_3p
mirBase accessionNone
Sequence 
40- GCCCUCUAUCAACGCUGCCCUA -62
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