MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-34-P17

Family name MIR-34 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-34-P13  Lpo-Mir-34-P14  Lpo-Mir-34-P15  Lpo-Mir-34-P16  Lpo-Mir-34-P18 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666308.1: 215019-215075 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P17)		 Mir-317-P13 NW_013666308.1: 203107-203166 [+] Ensembl
Mir-277-P13 NW_013666308.1: 207630-207689 [+] Ensembl
Mir-34-P17 NW_013666308.1: 215019-215075 [+] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
AAUUAUGCCCAUAAAGCAGCAGCAGGGUUGUGGCAGUGUGGUUAGCUGGUUGUAAAGAACCACACAACCACUUUCCGCACUUCCUCAAUCCACUGUUAUCCACUACCUUCAAGUUAA
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Structure
        10           20        30        40        50        
AAUUAUGCCCAUAAAGC---|    CA      U  C       UU  C       AAAG 
                    AGCAG  GGGUUG GG AGUGUGG  AG UGGUUGU    A
                    UUGUC  CCUAAC CC UCACGCC  UC ACCAACA    A
AAUUGAACUUCCAUCACCUA^    A-      U  U       UU  -       CACC 
     110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-34-P17_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUGGUUAGCUGGUUGU -23
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Star sequence

Lpo-Mir-34-P17_3p*
mirBase accessionNone
Sequence 
35- AACCACUUUCCGCACUUCCUCA -57
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