MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-34-P15

Family name MIR-34 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-34-P13  Lpo-Mir-34-P14  Lpo-Mir-34-P16  Lpo-Mir-34-P17  Lpo-Mir-34-P18 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013671198.1: 67836-67894 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P15)		 Mir-277-P15 NW_013671198.1: 49812-49871 [+] Ensembl
Mir-34-P15 NW_013671198.1: 67836-67894 [+] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
GCUGCCAUCUAGCGAGUAGAGGUAGUACUGUGGCAGUGUGGUUAGCUGGUUGUGAGUAUUAGUAAACAACCACUAUCUGCAGUGCUUCAAUAUACCUCUAACUAUCAACACUCGAUGUA
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Structure
        10           20        30        40        50         
GCUGCCAUCUAGCGAGU---|      GUAC  U    G  UG U   C       GAGUA 
                    AGAGGUA    UG GGCA UG  G UAG UGGUUGU     U
                    UCUCCAU    AC UCGU AC  C AUC ACCAACA     U
AUGUAGCUCACAACUAUCAA^      AUA-  U    G  GU U   -       AAUGA 
       110       100        90         80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-34-P15_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUGGUUAGCUGGUUGU -23
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Star sequence

Lpo-Mir-34-P15_3p*
mirBase accessionNone
Sequence 
37- AACCACUAUCUGCAGUGCUUCA -59
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