Mir-34-P14

MirGeneDB ID

Lpo-Mir-34-P14

Family name

MIR-34 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-34-P13 Lpo-Mir-34-P15 Lpo-Mir-34-P16 Lpo-Mir-34-P17 Lpo-Mir-34-P18

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mgi-Mir-34 Mom-Mir-34 Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Tca-Mir-34 Tur-Mir-34 War-Mir-34

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668938.1: 83480-83538 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P14)

Mir-277-P14 NW_013668938.1: 55215-55274 [+] Ensembl
Mir-34-P14 NW_013668938.1: 83480-83538 [+] Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GCUGCCAUCUAGCGAUUAGAGGUUCUACUGUGGCAGUGUGGUUAGCUGGUUGUGAGCUUCUACAAACAACCACUACCUGCAUUGCUUCAGAACACCUCUAACUAUCAACAUGAAAACUG

Get precursor sequence

Structure

        10           20        30        40        50         
GCUGCCAUCUAGCGAUU---|     UCUA   U       UG U   C       GAGCU 
                    AGAGGU    CUG GGCAGUG  G UAG UGGUUGU     U
                    UCUCCA    GAC UCGUUAC  C AUC ACCAACA     C
GUCAAAAGUACAACUAUCAA^     CAA-   U       GU C   -       AACAU 
       110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-34-P14_5p

mirBase accession

None

Sequence

0- UGGCAGUGUGGUUAGCUGGUUGU -23

Get sequence

Star sequence

Lpo-Mir-34-P14_3p* (predicted)

mirBase accession

None

Sequence

37- AACCACUACCUGCAUUGCUUCA -59

Get sequence