Mir-34-P6a

MirGeneDB ID

Bfl-Mir-34-P6a

Family name

MIR-34 (all species)

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-34a

Paralogues

Bfl-Mir-34-P5a Bfl-Mir-34-P5b Bfl-Mir-34-P6b Bfl-Mir-34-P7 Bfl-Mir-34-P8

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Bla-Mir-34-P6 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mgi-Mir-34 Mom-Mir-34 Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Tca-Mir-34 Tur-Mir-34 War-Mir-34

Node of Origin (locus)

B. floridae

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049996.1: 3243575-3243631 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-34-P6a)

Mir-34-P5a NC_049996.1: 3242823-3242884 [+] UCSC
Mir-34-P6a NC_049996.1: 3243575-3243631 [+] UCSC
Mir-34-P7 NC_049996.1: 3255952-3256015 [+] UCSC

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAAUAAGGGCUGGUUACCUGUGUGUUGCUGUGGCAGUGUGGAUAGCUGGCCGUUUCUAAUAUAACAGCCACUGUACACACUCCCGUAAUAACACACGGACUUACAAAGCGGAGAGGG

Get precursor sequence

Structure

        10          20        30        40        50        
AAAUAAGGGCUGGUUAC--|         C     C      G    C    C   UCU 
                   CUGUGUGUUG UGUGG AGUGUG AUAG UGGC GUU   A
                   GGCACACAAU AUGCC UCACAC UGUC ACCG CAA   A
GGGAGAGGCGAAACAUUCA^         A     C      A    -    A   UAU 
     110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Bfl-Mir-34-P6a_5p

mirBase accession

MIMAT0009475

Sequence

0- UGGCAGUGUGGAUAGCUGGCCGUUU -25

Get sequence

Star sequence

Bfl-Mir-34-P6a_3p* (predicted)

mirBase accession

None

Sequence

33- ACAGCCACUGUACACACUCCCGUA -57

Get sequence