MirGeneDB 3.0
MirGeneDB ID

Xbo-Mir-34-P25a

Family name MIR-34 (all species)
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues Xbo-Mir-34-P25b 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) X. bocki
Node of Origin (family) Bilateria
Genome context
(genome.xe)		 scaffold1430: 17979-18038 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P25a)		 Mir-34-P25a scaffold1430: 17979-18038 [+] UCSC Ensembl
Mir-34-P25b scaffold1430: 18761-18820 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
UCGGCAGUUCUGGAAAUGAGCGUUUUCAUAAGGCAGUGUGGUUAGCUGGUUGUGGAAUCGAGGUACACAGCCACUUAUUACACUACCCAUUGAAAGGGUGAAUAUACAUCGAUGCCCCCC
Get precursor sequence
Structure
        10          20        30        40        50          
UCGGCAGUUCUGGAAAUGA--| G      UAA  C        U  C       GGAAUC 
                     GC UUUUCA   GG AGUGUGGU AG UGGUUGU      \
                     UG GAAAGU   CC UCACAUUA UC ACCGACA      G
CCCCCCGUAGCUACAUAUAAG^ G      UAC  A        U  -       CAUGGA 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To To To
Mature sequence

Xbo-Mir-34-P25a_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUGGUUAGCUGGUUGU -23
Get sequence
Star sequence

Xbo-Mir-34-P25a_3p*
mirBase accessionNone
Sequence 
38- AGCCACUUAUUACACUACCCAU -60
Get sequence