MirGeneDB 3.0
123 Branchiostoma floridae microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID ▼ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC To
Bfl-Mir-12494 None MIR-12494 GGCCUAA None None NC_049995.1 9464332 9464391 + Branchiostoma Branchiostoma Unknown 1
Bfl-Mir-12493 None MIR-12493 CCCUGGU None None NC_049995.1 4326931 4326989 + Branchiostoma Branchiostoma Unknown 1 1
Bfl-Mir-12492 None MIR-12492 CAUGAUA None None NC_049982.1 15812188 15812247 - Branchiostoma Branchiostoma Unknown 1
Bfl-Mir-12491 None MIR-12491 UCUUCCU None None NC_049995.1 4326455 4326514 + Branchiostoma Branchiostoma Unknown 1
Bfl-Mir-12490 None MIR-12490 AAAGGUG None None NC_049989.1 2530565 2530626 + Branchiostoma Branchiostoma Unknown 1
Bfl-Mir-12489-P3 None MIR-12489 AGUGGUC None None NC_049990.1 15553768 15553827 - Branchiostoma Branchiostoma Unknown 1 1
Bfl-Mir-12489-P2 None MIR-12489 AGUGGUC None None NC_049990.1 15554360 15554418 - Branchiostoma Branchiostoma Unknown 1
Bfl-Mir-12489-P1 None MIR-12489 GAGCCUC None None NC_049990.1 15555062 15555121 - Branchiostoma Branchiostoma Unknown 1 1
Bfl-Mir-4891 bfl-mir-4891 MIR-4891 GUAACAG MIMAT0020480 MIMAT0020481 NC_049980.1 2032948 2033007 + Branchiostoma Branchiostoma No 1
Bfl-Mir-4888 bfl-mir-4888 MIR-4888 GCAGAGC MIMAT0020475 None NC_049989.1 2529761 2529819 + Branchiostoma Branchiostoma No 1
Bfl-Mir-4887 bfl-mir-4887 MIR-4887 UCUCGAU MIMAT0020474 None NW_023365726.1 63878 63934 + Branchiostoma Branchiostoma No 1
Bfl-Mir-4886 bfl-mir-4886 MIR-4886 UUGCCGA None MIMAT0020473 NC_049987.1 6930958 6931016 - Branchiostoma Branchiostoma No 1
Bfl-Mir-4881 bfl-mir-4881 MIR-4881 CUAUUUG MIMAT0020464 None NC_049989.1 11513754 11513816 - B. floridae B. floridae No 1
Bfl-Mir-4880 bfl-mir-4880 MIR-4880 UUGCUAU MIMAT0020463 None NC_049980.1 18843929 18843988 + Branchiostoma Branchiostoma Unknown 1
Bfl-Mir-4879 bfl-mir-4879 MIR-4879 AAACUAU MIMAT0020462 None NW_023365693.1 8732 8790 - Branchiostoma Branchiostoma No
Bfl-Mir-4876-P2 bfl-mir-4876 MIR-4876 UUACGUG None MIMAT0020459 NC_049982.1 26938689 26938749 - B. floridae Branchiostoma No 1 1
Bfl-Mir-4876-P1 bfl-mir-4876 MIR-4876 UUACGUG None MIMAT0020459 NC_049984.1 7355971 7356031 + B. floridae Branchiostoma No 1 1
Bfl-Mir-4874 bfl-mir-4874 MIR-4874 GUUUGUA MIMAT0020453 MIMAT0020454 NC_049983.1 19101237 19101297 - Branchiostoma Branchiostoma No 1
Bfl-Mir-4873 bfl-mir-4873 MIR-4873 GUUCCCA MIMAT0020452 None NC_049988.1 7250319 7250376 - Branchiostoma Branchiostoma No
Bfl-Mir-4872-P33b bfl-mir-4872c-2 MIR-4872 GUCAGGA MIMAT0020116 None NC_049995.1 13194771 13194829 + B. floridae Branchiostoma Unknown 1
Bfl-Mir-4872-P33a bfl-mir-4872c-1 MIR-4872 GUCAGGA MIMAT0020116 None NC_049995.1 13194568 13194626 + B. floridae Branchiostoma Unknown 1
Bfl-Mir-4872-P32 bfl-mir-4872a MIR-4872 GCCGGGA MIMAT0020114 None NC_049995.1 13214051 13214109 + B. floridae Branchiostoma Unknown 1
Bfl-Mir-4871 bfl-mir-4871 MIR-4871 UUGGCAC MIMAT0020112 MIMAT0020113 NW_023365955.1 83221 83283 - Branchiostoma Branchiostoma No 1
Bfl-Mir-4869 bfl-mir-4869 MIR-4869 CGAUGUU MIMAT0020108 MIMAT0020109 NC_049988.1 15245629 15245693 - Branchiostoma Branchiostoma Unknown 1 1 1
Bfl-Mir-4868-P2 bfl-mir-4868b MIR-4868 CAGCUCC None MIMAT0020105 NC_049981.1 9942475 9942534 - Branchiostoma Branchiostoma Yes 1
Bfl-Mir-4868-P1 bfl-mir-4868a MIR-4868 CAGCUCC None MIMAT0020104 NC_049981.1 9953158 9953217 - Branchiostoma Branchiostoma Yes 1 1
Bfl-Mir-4866 bfl-mir-4866 MIR-4866 CACACUU MIMAT0020101 MIMAT0020102 NC_049983.1 19807631 19807687 + Branchiostoma Branchiostoma No 1
Bfl-Mir-4865 V bfl-mir-4865 MIR-4865 GUAGAGA MIMAT0020099 MIMAT0020100 NC_049983.1 11748784 11748850 + Branchiostoma Branchiostoma 2 No 1
Bfl-Mir-4864 bfl-mir-4864 MIR-4864 AGCCAGA MIMAT0020097 MIMAT0020098 NC_049979.1 27696682 27696744 - Branchiostoma Branchiostoma No 1
Bfl-Mir-4863 bfl-mir-4863 MIR-4863 GGGCCAU MIMAT0020095 MIMAT0020096 NC_049983.1 20597426 20597487 - Branchiostoma Branchiostoma No 1
Bfl-Mir-4862 bfl-mir-4862 MIR-4862 CGCGUUU MIMAT0020091 None NC_049988.1 15243748 15243805 - Branchiostoma Branchiostoma Unknown 1
Bfl-Mir-4861 bfl-mir-4861 MIR-4861 UUUACGU None MIMAT0020090 NC_049984.1 8835182 8835242 + Branchiostoma Branchiostoma No
Bfl-Mir-4860 bfl-mir-4860 MIR-4860 GUAGAGA MIMAT0020088 MIMAT0020089 NC_049983.1 11749662 11749723 + Branchiostoma Branchiostoma No 1 1 1
Bfl-Mir-4859 bfl-mir-4859 MIR-4859 GCAGCGA MIMAT0020086 MIMAT0020087 NC_049979.1 14957279 14957338 + Branchiostoma Branchiostoma No 1
Bfl-Mir-4857 bfl-mir-4857 MIR-4857 CGAUGUU MIMAT0020083 None NC_049988.1 15244458 15244521 - Branchiostoma Branchiostoma No 1
Bfl-Mir-4057 bfl-mir-4057-1 MIR-4057 UUGCUAC None MIMAT0020465 NC_049979.1 13086188 13086246 - Chordata Chordata No 1 1
Bfl-Mir-2076 bfl-mir-2076 MIR-2076 AUUGCAC MIMAT0010005 MIMAT0019175 NC_049986.1 19602353 19602409 + Branchiostoma Branchiostoma No
Bfl-Mir-2072 bfl-mir-2072 MIR-2072 GCAACAU MIMAT0010000 MIMAT0019173 NC_049983.1 20597094 20597149 - Branchiostoma Branchiostoma No
Bfl-Mir-2071 bfl-mir-2071 MIR-2071 UUGUUAC MIMAT0019172 MIMAT0009999 NC_049982.1 18526440 18526501 + Branchiostoma Branchiostoma No
Bfl-Mir-2070 bfl-mir-2070 MIR-2070 UUCCACA MIMAT0009998 MIMAT0019171 NC_049987.1 24240350 24240409 - Branchiostoma Branchiostoma No 1
Bfl-Mir-2068 bfl-mir-2068 MIR-2068 UUCCUAU MIMAT0009996 MIMAT0019170 NC_049980.1 24867355 24867411 + Branchiostoma Branchiostoma No 1
Bfl-Mir-2062 bfl-mir-2062 MIR-2062 GCAACAA MIMAT0009988 MIMAT0019169 NC_049986.1 15355280 15355338 + Branchiostoma Branchiostoma No 1
Bfl-Mir-2061 bfl-mir-2061 MIR-2061 UGCAUAG None MIMAT0009987 NC_049984.1 7654702 7654760 - Branchiostoma Branchiostoma No 1 1
Bfl-Mir-2058 bfl-mir-2058 MIR-2058 GAGAAGU MIMAT0009984 MIMAT0019167 NC_049984.1 18063129 18063187 - Branchiostoma Branchiostoma No 1 1 1
Bfl-Mir-2057 bfl-mir-2057 MIR-2057 GAGAAGU MIMAT0009983 None NC_049984.1 18064151 18064211 - Branchiostoma Branchiostoma Unknown 1
Bfl-Mir-2056 bfl-mir-2056 MIR-2056 UUCACUG None MIMAT0009982 NC_049979.1 20104446 20104505 + Branchiostoma Branchiostoma No 1
Bfl-Mir-375 bfl-mir-375 MIR-375 UUGUUCG None MIMAT0009501 NC_049988.1 5418343 5418405 + Nephrozoa Nephrozoa No 1
Bfl-Mir-281 bfl-mir-281 MIR-281 GUCAUGG None MIMAT0009500 NC_049994.1 17378029 17378088 - Nephrozoa Nephrozoa No 1
Bfl-Mir-278 bfl-mir-278 MIR-278 CGGUGGG None MIMAT0010135 NC_049979.1 19830629 19830690 - Bilateria Bilateria No 1
Bfl-Mir-252-P2 bfl-mir-252a MIR-252 UAAGUAC MIMAT0009498 None NC_049982.1 20092666 20092725 - Bilateria Bilateria Unknown 1
Bfl-Mir-252-P1 V bfl-mir-252b MIR-252 UAAGUAG MIMAT0009499 MIMAT0019151 NC_049982.1 20093383 20093447 - Bilateria Bilateria 2 No
Bfl-Mir-242 bfl-mir-242 MIR-242 GCGUAGG MIMAT0009497 None NC_049983.1 386229 386284 - Nephrozoa Nephrozoa Unknown
Bfl-Mir-219 bfl-mir-219 MIR-219 GAUUGUC MIMAT0010012 None NC_049986.1 24495117 24495175 + Bilateria Bilateria Unknown 1
Bfl-Mir-217 bfl-mir-217 MIR-217 ACUGCAU MIMAT0009496 None NC_049979.1 16399807 16399863 - Chordata Chordata Unknown 1
Bfl-Mir-216-P2 bfl-mir-216 MIR-216 AAUCUCA MIMAT0009495 MIMAT0019150 NC_049979.1 16400702 16400762 - Nephrozoa Nephrozoa No 1
Bfl-Mir-210 bfl-mir-210 MIR-210 UGUGCGU MIMAT0019149 MIMAT0009494 NC_049982.1 18727157 18727219 + Bilateria Bilateria No 1 1 1
Bfl-Mir-193-P1o2 None MIR-193 ACUGGCU None None NC_049982.1 12293365 12293425 + B. floridae Bilateria Unknown 1
Bfl-Mir-193-P1o1b None MIR-193 ACUGGCU None None NC_049982.1 12291054 12291112 + B. floridae Bilateria Unknown 1
Bfl-Mir-193-P1o1a None MIR-193 ACUGGCU None None NC_049982.1 12290547 12290605 + B. floridae Bilateria Unknown 1
Bfl-Mir-193-P1k bfl-mir-193b MIR-193 ACUGGCC None MIMAT0020111 NC_049982.1 12294554 12294613 + Branchiostoma Bilateria No
Bfl-Mir-193-P1j None MIR-193 ACUGGCC None None NC_049982.1 12293832 12293890 + Branchiostoma Bilateria Unknown
Bfl-Mir-193-P1e bfl-mir-193a MIR-193 ACUGGCC None MIMAT0009490 NC_049981.1 21537097 21537155 - Branchiostoma Bilateria Unknown 1
Bfl-Mir-190 bfl-mir-190 MIR-190 GAUAUGU MIMAT0009489 None NC_049981.1 1701595 1701653 - Bilateria Bilateria Unknown 1 1
Bfl-Mir-184 bfl-mir-184 MIR-184 GGACGGA MIMAT0019148 MIMAT0009488 NC_049981.1 9876283 9876347 + Nephrozoa Nephrozoa No 1 1
Bfl-Mir-153 bfl-mir-153 MIR-153 UGCAUAG None MIMAT0025391 NC_049988.1 729633 729692 + Bilateria Bilateria Unknown 1
Bfl-Mir-137 bfl-mir-137 MIR-137 AUUGCUU None MIMAT0009485 NC_049993.1 21091585 21091644 + Bilateria Bilateria No
Bfl-Mir-135-P6 bfl-mir-135a-1 MIR-135 AUGGCUU MIMAT0009992 None NC_049983.1 13598038 13598096 - Branchiostoma Chordata Unknown 1 1
Bfl-Mir-135-P5 bfl-mir-135b-1 MIR-135 AUGGCUU MIMAT0010194 None NC_049983.1 13598256 13598313 - Branchiostoma Chordata Unknown 1
Bfl-Mir-133 V bfl-mir-133 MIR-133 UUGGUCC None MIMAT0009484 538437112_AFPZ209224 434 493 + Bilateria Bilateria 2 No
Bfl-Mir-129-P8 bfl-mir-129b MIR-129 CCUUCUG MIMAT0020080 None NC_049992.1 13848286 13848343 - Branchiostoma Chordata Unknown 1 1
Bfl-Mir-129-P7 bfl-mir-129a MIR-129 CUUUUUG MIMAT0010008 MIMAT0010009 NC_049982.1 9566952 9567011 + Branchiostoma Chordata Unknown
Bfl-Mir-124 bfl-mir-124 MIR-124 GUGUUCA MIMAT0019146 MIMAT0009482 Bf_V2_32:1879500-1880400 435 493 + Bilateria Bilateria Unknown 1
Bfl-Mir-103-P8 bfl-mir-2067 MIR-103 AGCAGCA None MIMAT0009995 NC_049980.1 23517098 23517157 + Branchiostoma Bilateria Yes
Bfl-Mir-103-P7 bfl-mir-2066 MIR-103 AGCAGCA None MIMAT0009994 NC_049980.1 23514642 23514701 + Branchiostoma Bilateria No 1 1
Bfl-Mir-103-P6 bfl-mir-2064 MIR-103 AGCAGCA None MIMAT0009990 NC_049987.1 7507428 7507486 - Branchiostoma Bilateria No 1
Bfl-Mir-103-P5 bfl-mir-2013 MIR-103 GCAGCAU None MIMAT0009991 NC_049987.1 7512038 7512104 - Branchiostoma Bilateria No 1 1
Bfl-Mir-96-P3 bfl-mir-183 MIR-96 AUGGCAC MIMAT0009487 None NC_049983.1 18504837 18504895 + Bilateria Bilateria No
Bfl-Mir-96-P2k None MIR-96 AGAAUUC None None NC_049980.1 17547236 17547307 - Branchiostoma Bilateria Unknown
Bfl-Mir-96-P2j None MIR-96 AGAAUUC None None NC_049980.1 17547417 17547484 - Branchiostoma Bilateria Unknown 1 1
Bfl-Mir-96-P2i bfl-mir-182b MIR-96 AGAAUUC None MIMAT0020081 NC_049980.1 17547811 17547890 - Branchiostoma Bilateria Unknown 1
Bfl-Mir-96-P2h bfl-mir-182a MIR-96 UUGGCAC MIMAT0009486 None NC_049980.1 17548107 17548183 - Branchiostoma Bilateria Unknown 1
Bfl-Mir-96-P2g None MIR-96 UUGGCAC None None NC_049980.1 17527696 17527760 - Branchiostoma Bilateria Unknown
Bfl-Mir-96-P2f bfl-mir-182d MIR-96 AGAAUUC None MIMAT0020484 NC_049980.1 17527947 17528024 - Branchiostoma Bilateria Unknown 1
Bfl-Mir-96-P1 bfl-mir-96 MIR-96 UUGGCAC MIMAT0009480 MIMAT0019144 NC_049983.1 18505918 18505977 + Bilateria Bilateria No
Bfl-Mir-92-o8 bfl-mir-2063 MIR-92 AUUGCAC None MIMAT0009989 NC_049986.1 9122708 9122772 + Branchiostoma Bilateria No 1 1
Bfl-Mir-92-o7 bfl-mir-2059 MIR-92 AAGGCAA MIMAT0019168 MIMAT0009985 NC_049994.1 4472650 4472707 + Branchiostoma Bilateria Unknown 1 1
Bfl-Mir-92-o6 bfl-mir-92d MIR-92 AUUGCAC MIMAT0020079 None NC_049979.1 12400557 12400617 - Branchiostoma Bilateria No 1 1
Bfl-Mir-92-o5 None MIR-92 AUUGCUC None None NC_049979.1 12400671 12400726 - Branchiostoma Bilateria Unknown 1
Bfl-Mir-92-o4 bfl-mir-92b MIR-92 AUUGCAC MIMAT0019143 MIMAT0009479 NC_049981.1 13639441 13639502 + Branchiostoma Bilateria No 1
Bfl-Mir-92-o3 bfl-mir-92c MIR-92 AUUGCAC None MIMAT0010010 NC_049981.1 13639020 13639073 + Branchiostoma Bilateria No 1 1
Bfl-Mir-92-o2 bfl-mir-92a-1 MIR-92 AUUGCAC None MIMAT0009478 NC_049981.1 15365141 15365198 + Branchiostoma Bilateria No 1
Bfl-Mir-92-o1 None MIR-92 AUUGCAC None None NC_049981.1 15364646 15364704 + Branchiostoma Bilateria No 1
Bfl-Mir-71 bfl-mir-71 MIR-71 GAAAGAC MIMAT0009476 MIMAT0019142 NC_049984.1 7950555 7950614 - Nephrozoa Nephrozoa No
Bfl-Mir-34-P8 bfl-mir-34b MIR-34 GGCAGUG MIMAT0019174 MIMAT0010002 NC_049995.1 3397470 3397529 + Branchiostoma Bilateria No 1 1
Bfl-Mir-34-P7 None MIR-34 GGCAGUG None None NC_049996.1 3255952 3256015 + Branchiostoma Bilateria Unknown 1
Bfl-Mir-34-P6b bfl-mir-34a MIR-34 GGCAGUG MIMAT0009475 None NC_049996.1 202038 202094 - B. floridae Bilateria Unknown 1
Bfl-Mir-34-P6a bfl-mir-34a MIR-34 GGCAGUG MIMAT0009475 None NC_049996.1 3243575 3243631 + B. floridae Bilateria Unknown
Bfl-Mir-34-P5b bfl-mir-34c-2 MIR-34 GGCAGUG None MIMAT0020451 NC_049996.1 202785 202846 - B. floridae Bilateria No 1
Bfl-Mir-34-P5a bfl-mir-34c-1 MIR-34 GGCAGUG None MIMAT0020451 NC_049996.1 3242823 3242884 + B. floridae Bilateria No 1
Bfl-Mir-33-P7 bfl-mir-33-1 MIR-33 UGCAUUG MIMAT0009474 None NC_049985.1 3903955 3904013 - Branchiostoma Bilateria No 1
Bfl-Mir-33-P6 bfl-mir-33-2 MIR-33 UGCAUUG MIMAT0009474 None NC_049985.1 3904364 3904422 - Branchiostoma Bilateria Yes 1 1
Bfl-Mir-31 bfl-mir-31 MIR-31 GGCAAGA MIMAT0009473 MIMAT0019141 NC_049993.1 300554 300614 - Bilateria Bilateria No
Bfl-Mir-29-P2 bfl-mir-29a MIR-29 CUGAUUU MIMAT0019139 MIMAT0009471 NC_049983.1 19807093 19807152 + Bilateria Bilateria No 1
Bfl-Mir-29-P1 bfl-mir-29b MIR-29 AGCACCA MIMAT0019140 MIMAT0009472 539444465_AFPZ577358 742 800 - Bilateria Bilateria No 1
Bfl-Mir-22-P2c bfl-mir-4868c MIR-22 CAGCUCC MIMAT0020106 MIMAT0020107 NC_049994.1 9332985 9333043 + Branchiostoma Bilateria No 1 1
Bfl-Mir-22-P2b bfl-mir-4868b MIR-22 CAGCUCC None MIMAT0020105 NC_049981.1 9942475 9942534 - Branchiostoma Bilateria Yes 1
Bfl-Mir-22-P2a bfl-mir-4868a MIR-22 CAGCUCC None MIMAT0020104 NC_049981.1 9953158 9953217 - Branchiostoma Bilateria Yes 1 1
Bfl-Mir-22-P1 bfl-mir-22 MIR-22 AGCUGCC MIMAT0019138 MIMAT0009470 NC_049989.1 18881875 18881932 - Bilateria Bilateria No 1
Bfl-Mir-22-o3e bfl-mir-4900a-1 MIR-22 AGCUGGC None MIMAT0020492 NC_049989.1 18866204 18866261 - B. floridae Bilateria No 1
Bfl-Mir-22-o3d bfl-mir-4900b-1 MIR-22 AGCUGCC None MIMAT0020493 NC_049989.1 18866452 18866510 - B. floridae Bilateria No 1
Bfl-Mir-10-P10 bfl-mir-10b MIR-10 ACCCUGU MIMAT0009468 None Bf_V2_12:883000-883500 17 77 + Branchiostoma Eumetazoa Unknown
Bfl-Mir-10-P9 bfl-mir-10c MIR-10 ACCCUGU MIMAT0009469 None NC_049994.1 10433249 10433307 + Branchiostoma Eumetazoa Unknown 1 1
Bfl-Mir-10-P3 bfl-mir-125a MIR-10 CCCUGAG MIMAT0009483 MIMAT0019147 NC_049979.1 15365561 15365616 + Bilateria Eumetazoa No 1 1
Bfl-Mir-10-P2 V bfl-mir-100 MIR-10 ACCCGUA MIMAT0009481 MIMAT0019145 NC_049979.1 15363827 15363883 + Bilateria Eumetazoa 2 No 1
Bfl-Mir-10-P1 V bfl-mir-10a MIR-10 UACCCUG MIMAT0009466 MIMAT0009467 NC_049994.1 10572280 10572342 + Bilateria Eumetazoa 2 No 1
Bfl-Mir-9 bfl-mir-9-1 MIR-9 CUUUGGU MIMAT0009465 None NC_049980.1 2517235 2517295 - Bilateria Bilateria Unknown 1 1
Bfl-Mir-8-P3 bfl-mir-200b MIR-8 AAUACUG None MIMAT0009492 NC_049992.1 3174683 3174743 - Chordata Nephrozoa No 1 1
Bfl-Mir-8-P2 bfl-mir-200c MIR-8 AACACUG None MIMAT0009493 NC_049992.1 3177478 3177535 - Chordata Nephrozoa No 1 1
Bfl-Mir-8-P1 V bfl-mir-200a MIR-8 AAUACUG None MIMAT0009491 NC_049992.1 3180219 3180276 - Chordata Nephrozoa 2 Yes 1
Bfl-Mir-7 bfl-mir-7 MIR-7 GGAAGAC MIMAT0009464 None NC_049980.1 33330367 33330429 + Bilateria Bilateria Unknown 1 1 1
Bfl-Mir-1 bfl-mir-1 MIR-1 GGAAUGU MIMAT0019137 MIMAT0009463 NC_049980.1 25940046 25940105 - Bilateria Bilateria No 1
Bfl-Let-7-P4 bfl-let-7a-2 LET-7 GAGGUAG MIMAT0009462 None NC_049979.1 15365859 15365925 + Branchiostoma Bilateria No 1
Bfl-Let-7-P3 bfl-let-7a-1 LET-7 GAGGUAG MIMAT0009462 MIMAT0019176 NC_049979.1 15364081 15364147 + Branchiostoma Bilateria Unknown 1

(red - mature/co-mature, blue - star)

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