| MirGeneDB ID | Bfl-Mir-4888 |
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| Family name |
MIR-4888 (all species) |
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| Seed |
GCAGAGC |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4888
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| Paralogues |
|
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| Orthologues |
Bla-Mir-4888
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049989.1: 2529761-2529819 [+]
UCSC
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Precursor
(pre-Mir +30nt flank) |
CUCCACACACAAUGCAUGAGUUGUGUGGGGUGCAGAGCUUGUGCGAUUGGCGCUUGACGACGAAGAGCGCCACACGCGAGCUCUUCAUCCCAACCUUCUCUCUCAGACACCGGCUACUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCCACACACAAUGCAU--| UUGUG C CGAU UGACG
GAG UGGGGUG AGAGCUUGUG UGGCGCU \
CUC ACCCUAC UCUCGAGCGC ACCGCGA A
UUCAUCGGCCACAGACUCU^ UUCCA U AC-- GAAGC
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Bfl-Mir-4888_5p |
| mirBase accession | MIMAT0020475 |
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| Sequence |
0- UGCAGAGCUUGUGCGAUUGGCGCU -24
Get sequence
|
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| Star sequence |
Bfl-Mir-4888_3p* |
| mirBase accession | None |
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| Sequence |
37- CGCCACACGCGAGCUCUUCAUC -59
Get sequence
|
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