| MirGeneDB ID | Bfl-Mir-2062 |
|---|
| Family name |
MIR-2062 (all species) |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-2062
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| Paralogues |
|
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| Orthologues |
Bla-Mir-2062
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049986.1: 15355280-15355338 [+]
UCSC
|
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| Seed |
GCAACAA |
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Precursor
(pre-Mir +30nt flank) |
GGGCUGUGUUCAUUCACGGCCGCCCUGCUCUGCAACAAUAUUUCAUCAGUGGUGAACUCCAAAAUCUACUGGUGAAAUGUAGUUGCGUAGGAGGCCGGCCACUGUCAACAGGGGGAACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGCUGUGUUCAUUCAC--| C G C A UGAACU
GGCCG CCU CU UGCAAC AUAUUUCAUCAGUGG \
CCGGC GGA GA GCGUUG UGUAAAGUGGUCAUC C
GCAAGGGGGACAACUGUCA^ C G U A UAAAAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bfl-Mir-2062_5p |
| mirBase accession | MIMAT0009988 |
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| Sequence |
0- UGCAACAAUAUUUCAUCAGUGG -22
Get sequence
|
|---|
| Star sequence |
Bfl-Mir-2062_3p* |
| mirBase accession | MIMAT0019169 |
|---|
| Sequence |
37- ACUGGUGAAAUGUAGUUGCGUA -59
Get sequence
|
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