MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-22-o3e

Family name MIR-22 (all species)
Seed AGCUGGC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4900a-1
Paralogues Bfl-Mir-22-o1a  Bfl-Mir-22-o1b  Bfl-Mir-22-o1c  Bfl-Mir-22-o3d  Bfl-Mir-22-P1 
Orthologues
Node of Origin (locus) B. floridae
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049989.1: 18866204-18866261 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-22-o3e)
Mir-22-o3e NC_049989.1: 18866204-18866261 [-] UCSC
Mir-22-o3d NC_049989.1: 18866452-18866510 [-] UCSC
Mir-22-P1 NC_049989.1: 18881875-18881932 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AAACAAACAAACAUGGGCUUUGCUAAGAGUUUUUCUUCCUUGGCACAGCUCUGUGACAGUGGAACAUAGCUGGCUGGCGAAGAAAUGCCCUUCCAAGGUUCUGUCGUCAUUACACCAU
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Structure
        10           20        30        40        50         
AAACAAACAAACAUGGG---|    CU   A  U       C UG  A     C  UGACA 
                    CUUUG  AAG GU UUUCUUC U  GC CAGCU UG     \
                    GGAAC  UUC CG AAAGAAG G  CG GUCGA AC     G
UACCACAUUACUGCUGUCUU^    C-   C  U       C GU  -     U  AAGGU 
      110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Bfl-Mir-22-o3e_5p*

mirBase accessionNone
Sequence
0- UUUUCUUCCUUGGCACAGCUCUG -23
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Mature sequence

Bfl-Mir-22-o3e_3p

mirBase accessionMIMAT0020492
Sequence
36- UAGCUGGCUGGCGAAGAAAUGC -58
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