MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-22-o3d

Family name MIR-22 (all species)
Seed AGCUGCC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4900b-1
Paralogues Bfl-Mir-22-o1a  Bfl-Mir-22-o1b  Bfl-Mir-22-o1c  Bfl-Mir-22-o3e  Bfl-Mir-22-P1 
Orthologues
Node of Origin (locus) B. floridae
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049989.1: 18866452-18866510 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-22-o3d)
Mir-22-o3e NC_049989.1: 18866204-18866261 [-] UCSC
Mir-22-o3d NC_049989.1: 18866452-18866510 [-] UCSC
Mir-22-P1 NC_049989.1: 18881875-18881932 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAGGAAUCCUGCAAUGGCCUCAGUUAGGGCUGUUCUUCGCUGGAGUAGCUCUGUGACUAUGGGACCAUAGCUGCCUGGCGAAGAAUGGUCCCUUGAGGUGCUGUCGACAAAUAACGCAA
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Structure
        10            20        30        40        50         
CAGGAAUCCUGCAAUGG----|     UUA              UG A      C  UGACU 
                     CCUCAG   GGGCUGUUCUUCGC  G GUAGCU UG     A
                     GGAGUU   CCUGGUAAGAAGCG  C CGUCGA AC     U
AACGCAAUAAACAGCUGUCGU^     C--              GU -      U  CAGGG 
       110       100          90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bfl-Mir-22-o3d_5p*

mirBase accessionNone
Sequence
0- UGUUCUUCGCUGGAGUAGCUCUG -23
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Mature sequence

Bfl-Mir-22-o3d_3p

mirBase accessionMIMAT0020493
Sequence
37- UAGCUGCCUGGCGAAGAAUGGU -59
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