Mir-193-P1j

MirGeneDB ID

Bfl-Mir-193-P1j

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

Paralogues

Bfl-Mir-193-P1e Bfl-Mir-193-P1k Bfl-Mir-193-P1o1a Bfl-Mir-193-P1o1b Bfl-Mir-193-P1o2

Orthologues

Aae-Mir-193-P1 Bge-Mir-193-P1 Bla-Mir-193-P1j1 Bla-Mir-193-P1j2 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cgi-Mir-193-P1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Esc-Mir-193-P1 Hme-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ovu-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Tca-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049982.1: 12293832-12293890 [+] UCSC

Precursor
(pre-Mir +30nt flank)

ACGUGCCAAAUGAUGCCCACUGUGGUCAGUCGGGACCUCGUGGGCCAGACGGUUAUGUAACAGACCCUACUGGCCCGCUAAGUCCUGAUCGACUGCAGUGACUUCAUUUUUCGAUGCCA

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Structure

        10          20        30        40        50         
ACGUGCCAAAUGAUGCC--     UG   A        CUC         AC-| UUAUG 
                   CACUG  GUC GUCGGGAC   GUGGGCCAG   GG     U
                   GUGAC  CAG UAGUCCUG   CGCCCGGUC   CC     A
ACCGUAGCUUUUUACUUCA     GU   C        AAU         AUC^ AGACA 
       110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

Tissue expression

To

Star sequence

Bfl-Mir-193-P1j_5p* (predicted)

mirBase accession

None

Sequence

0- CGGGACCUCGUGGGCCAGACGG -22

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Mature sequence

Bfl-Mir-193-P1j_3p (predicted)

mirBase accession

None

Sequence

37- UACUGGCCCGCUAAGUCCUGAU -59

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