MirGeneDB 2.1

MirGeneDB ID

Bla-Mir-193-P1j1

Family name MIR-193 (all species)
Seed ACUGGCC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-193-P1e  Bla-Mir-193-P1f1  Bla-Mir-193-P1f2  Bla-Mir-193-P1g1  Bla-Mir-193-P1g2  Bla-Mir-193-P1h1  Bla-Mir-193-P1h2  Bla-Mir-193-P1i1  Bla-Mir-193-P1i2  Bla-Mir-193-P1j2  Bla-Mir-193-P1k 
Orthologues Aae-Mir-193-P1  Bfl-Mir-193-P1j  Bge-Mir-193-P1  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cgi-Mir-193-P1  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dpu-Mir-193-P1  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Esc-Mir-193-P1  Hme-Mir-193-P1  Isc-Mir-193-P1  Lgi-Mir-193-P1  Npo-Mir-193-P1  Obi-Mir-193-P1  Ovu-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Tca-Mir-193-P1  Xbo-Mir-193-P1 
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Bilateria
Genome context
(BraLan2)
Sc0000154: 658502-658559 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUGCCGCAUGAUGCCCACUGUGGUCAGUCUGGACCUCGCGGAACAGUCGGUUUGUACCAGAUCCUACUGGCCCGCCAAGUCCUGAUCGACUGUAUGUGACUUACACUAAGUUACAG
Get precursor sequence
Structure
        10         20         30        40        50        
CAAUGCCGCAUGAUGCC-   -| UG   A   U    CUC    AA    C  UUUGU 
                  CAC UG  GUC GUC GGAC   GCGG  CAGU GG     A
                  GUG AU  CAG UAG CCUG   CGCC  GUCA CC     C
GACAUUGAAUCACAUUCA   U^ GU   C   U    AAC    CG    U  UAGAC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Em Em Em Em
Star sequence

Bla-Mir-193-P1j1_5p*

mirBase accessionNone
Sequence
0- CUGGACCUCGCGGAACAGUCGG -22
Get sequence
Mature sequence

Bla-Mir-193-P1j1_3p

mirBase accessionNone
Sequence
36- UACUGGCCCGCCAAGUCCUGAU -58
Get sequence