MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-193-P1j1

Family name MIR-193 (all species)
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-193-P1e  Bla-Mir-193-P1f1  Bla-Mir-193-P1f2  Bla-Mir-193-P1g1  Bla-Mir-193-P1g2  Bla-Mir-193-P1h1  Bla-Mir-193-P1h2  Bla-Mir-193-P1i1  Bla-Mir-193-P1i2  Bla-Mir-193-P1j2  Bla-Mir-193-P1k 
Orthologues Aae-Mir-193-P1  Aga-Mir-193-P1  Bfl-Mir-193-P1j  Bge-Mir-193-P1  Cbr-Mir-193-P1-v1  Cel-Mir-193-P1-v1  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dmo-Mir-193-P1-v1  Dpu-Mir-193-P1  Dsi-Mir-193-P1-v1  Dya-Mir-193-P1-v1  Eba-Mir-193-P1  Esc-Mir-193-P1  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Isc-Mir-193-P1  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Mgi-Mir-193-P1  Mom-Mir-193-P1  Npo-Mir-193-P1  Obi-Mir-193-P1  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pau-Mir-193-P1  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rph-Mir-193-P1  Snu-Mir-193-P1  Tca-Mir-193-P1  War-Mir-193-P1  Xbo-Mir-193-P1 
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000154: 658502-658559 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1j1)		 Mir-193-P1f2 Sc0000154: 654308-654366 [+] Ensembl
Mir-193-P1g1 Sc0000154: 656679-656740 [+] Ensembl
Mir-193-P1h1 Sc0000154: 657045-657102 [+] Ensembl
Mir-193-P1i2 Sc0000154: 658145-658203 [+] Ensembl
Mir-193-P1j1 Sc0000154: 658502-658559 [+] Ensembl
Mir-193-P1f1 Sc0000154: 659346-659404 [+] Ensembl
Mir-193-P1g2 Sc0000154: 661730-661788 [+] Ensembl
Mir-193-P1h2 Sc0000154: 662095-662152 [+] Ensembl
Mir-193-P1i1 Sc0000154: 663231-663289 [+] Ensembl
Mir-193-P1j2 Sc0000154: 663582-663639 [+] Ensembl
Mir-193-P1k Sc0000154: 665556-665614 [+] Ensembl
Seed ACUGGCC
Precursor
(pre-Mir +30nt flank)		 
CAAUGCCGCAUGAUGCCCACUGUGGUCAGUCUGGACCUCGCGGAACAGUCGGUUUGUACCAGAUCCUACUGGCCCGCCAAGUCCUGAUCGACUGUAUGUGACUUACACUAAGUUACAG
Get precursor sequence
Structure
        10         20         30        40        50        
CAAUGCCGCAUGAUGCC-   -| UG   A   U    CUC    AA    C  UUUGU 
                  CAC UG  GUC GUC GGAC   GCGG  CAGU GG     A
                  GUG AU  CAG UAG CCUG   CGCC  GUCA CC     C
GACAUUGAAUCACAUUCA   U^ GU   C   U    AAC    CG    U  UAGAC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Ad Em Em Em Em
Star sequence

Bla-Mir-193-P1j1_5p*
mirBase accessionNone
Sequence 
0- CUGGACCUCGCGGAACAGUCGG -22
Get sequence
Mature sequence

Bla-Mir-193-P1j1_3p
mirBase accessionNone
Sequence 
36- UACUGGCCCGCCAAGUCCUGAU -58
Get sequence