MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-193-P1

Family name MIR-193 (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-240
Paralogues Cbr-Mir-193-P2-v1 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1b  Aga-Mir-193-P1  Agr-Mir-193-P1l  Agr-Mir-193-P1m  Ami-Mir-193-P1a  Ami-Mir-193-P1b  Bfl-Mir-193-P1e  Bfl-Mir-193-P1j  Bfl-Mir-193-P1k  Bfl-Mir-193-P1o1a  Bfl-Mir-193-P1o1b  Bfl-Mir-193-P1o2  Bge-Mir-193-P1  Bla-Mir-193-P1e  Bla-Mir-193-P1f1  Bla-Mir-193-P1f2  Bla-Mir-193-P1g1  Bla-Mir-193-P1g2  Bla-Mir-193-P1h1  Bla-Mir-193-P1h2  Bla-Mir-193-P1i1  Bla-Mir-193-P1i2  Bla-Mir-193-P1j1  Bla-Mir-193-P1j2  Bla-Mir-193-P1k  Bta-Mir-193-P1a  Bta-Mir-193-P1b  Cel-Mir-193-P1-v1  Cfa-Mir-193-P1a  Cfa-Mir-193-P1b  Cja-Mir-193-P1a  Cja-Mir-193-P1b  Cli-Mir-193-P1a  Cmi-Mir-193-P1a  Cmi-Mir-193-P1b  Cpi-Mir-193-P1a  Cpi-Mir-193-P1b  Cpo-Mir-193-P1a  Cpo-Mir-193-P1b  Csc-Mir-193-P1u  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dmo-Mir-193-P1-v1  Dno-Mir-193-P1a  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1a  Dre-Mir-193-P1b1  Dre-Mir-193-P1b2  Dsi-Mir-193-P1-v1  Dya-Mir-193-P1-v1  Eba-Mir-193-P1  Eca-Mir-193-P1a  Eca-Mir-193-P1b  Efe-Mir-193-P1n  Efe-Mir-193-P1o  Esc-Mir-193-P1  Ete-Mir-193-P1a  Ete-Mir-193-P1b  Gga-Mir-193-P1a  Gga-Mir-193-P1b  Gja-Mir-193-P1b  Gmo-Mir-193-P1b2  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Hsa-Mir-193-P1a  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Laf-Mir-193-P1a  Laf-Mir-193-P1b  Lan-Mir-193-P1p  Lan-Mir-193-P1q  Lch-Mir-193-P1a  Lch-Mir-193-P1b  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Loc-Mir-193-P1a  Loc-Mir-193-P1b  Loc-Mir-193-P1b-as  Lpo-Mir-193-P1r  Lpo-Mir-193-P1s  Lpo-Mir-193-P1t  Mal-Mir-193-P1b2  Mdo-Mir-193-P1a  Mdo-Mir-193-P1b  Mgi-Mir-193-P1  Mml-Mir-193-P1a  Mml-Mir-193-P1b  Mmr-Mir-193-P1a  Mmr-Mir-193-P1b  Mmu-Mir-193-P1a  Mmu-Mir-193-P1b  Mom-Mir-193-P1  Mun-Mir-193-P1a  Mun-Mir-193-P1b  Neu-Mir-193-P1b  Npo-Mir-193-P1  Oan-Mir-193-P1a  Oan-Mir-193-P1b  Obi-Mir-193-P1  Ocu-Mir-193-P1a  Ocu-Mir-193-P1b  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pab-Mir-193-P1a  Pab-Mir-193-P1b  Pau-Mir-193-P1  Pbv-Mir-193-P1a  Pbv-Mir-193-P1b  Pcr-Mir-193-P1  Pfl-Mir-193-P1c  Pfl-Mir-193-P1d  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rno-Mir-193-P1a  Rno-Mir-193-P1b  Rph-Mir-193-P1  Sha-Mir-193-P1a  Sha-Mir-193-P1b  Sko-Mir-193-P1c  Sko-Mir-193-P1d  Snu-Mir-193-P1  Spt-Mir-193-P1a  Spt-Mir-193-P1b  Sto-Mir-193-P1a  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1a  Tgu-Mir-193-P1b  Tni-Mir-193-P1b2  War-Mir-193-P1  Xbo-Mir-193-P1  Xla-Mir-193-P1a3  Xla-Mir-193-P1a4  Xtr-Mir-193-P1a 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CB4)		 X: 13610718-13610779 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1-v1)		 Mir-193-P1-v1 X: 13610718-13610779 [+] Ensembl
Mir-193-P1-v2 X: 13610718-13610779 [+] Ensembl
Mir-193-P2-v1 X: 13610830-13610891 [+] Ensembl
Mir-193-P2-v2 X: 13610830-13610891 [+] Ensembl
Variant

Cbr-Mir-193-P1-v1
Seed UACUGGC
Precursor
(pre-Mir +30nt flank)		 
GCUGUCUUUAUUUUGAAACUGUUUUCAAAUCGAGAAUUUCGAGGCCUGAAUGCAAGAACCGUUUUGAGCAUACUGGCCUCCAAAUUUUCGCUUUGAAUUUUAGUUACGCGUGGUGAGAGUAA
Get precursor sequence
Structure
        10         20         30        40        50        60
GCUGUCUUUAUUUUGAA-    UU-|     U         C      UGA    AAGAAC 
                  ACUG   UUCAAA CGAGAAUUU GAGGCC   AUGC      C
                  UGAU   AAGUUU GCUUUUAAA CUCCGG   UACG      G
AAUGAGAGUGGUGCGCAU    UUU^     C         C      UCA    AGUUUU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-193-P1-v1_5p*
mirBase accessionNone
Sequence 
0- CGAGAAUUUCGAGGCCUGAAUGC -23
Get sequence
Mature sequence

Cbr-Mir-193-P1-v1_3p
mirBase accessionMIMAT0001306
Sequence 
39- AUACUGGCCUCCAAAUUUUCGCU -62
Get sequence
Variant

Cbr-Mir-193-P1-v2
Seed ACUGGCC
Precursor
(pre-Mir +30nt flank)		 
GCUGUCUUUAUUUUGAAACUGUUUUCAAAUCGAGAAUUUCGAGGCCUGAAUGCAAGAACCGUUUUGAGCAUACUGGCCUCCAAAUUUUCGCUUUGAAUUUUAGUUACGCGUGGUGAGAGUAA
Get precursor sequence
Structure
        10         20         30        40        50        60
GCUGUCUUUAUUUUGAA-    UU-|     U         C      UGA   CAAGAAC 
                  ACUG   UUCAAA CGAGAAUUU GAGGCC   AUG       C
                  UGAU   AAGUUU GCUUUUAAA CUCCGG   UAC       G
AAUGAGAGUGGUGCGCAU    UUU^     C         C      UCA   GAGUUUU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-193-P1-v2_5p*
mirBase accessionNone
Sequence 
0- CGAGAAUUUCGAGGCCUGAAUG -22
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Mature sequence

Cbr-Mir-193-P1-v2_3p
mirBase accessionMIMAT0001306
Sequence 
40- UACUGGCCUCCAAAUUUUCGCU -62
Get sequence