MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-193-P1a

Family name MIR-193 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-193b
Paralogues Ocu-Mir-193-P1b  Ocu-Mir-193-P2a  Ocu-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Aga-Mir-193-P1  Ami-Mir-193-P1a  Bge-Mir-193-P1  Bta-Mir-193-P1a  Cbr-Mir-193-P1-v1  Cel-Mir-193-P1-v1  Cfa-Mir-193-P1a  Cja-Mir-193-P1a  Cli-Mir-193-P1a  Cmi-Mir-193-P1a  Cpi-Mir-193-P1a  Cpo-Mir-193-P1a  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dmo-Mir-193-P1-v1  Dno-Mir-193-P1a  Dpu-Mir-193-P1  Dre-Mir-193-P1a  Dsi-Mir-193-P1-v1  Dya-Mir-193-P1-v1  Eba-Mir-193-P1  Eca-Mir-193-P1a  Esc-Mir-193-P1  Ete-Mir-193-P1a  Gga-Mir-193-P1a  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Hsa-Mir-193-P1a  Isc-Mir-193-P1  Laf-Mir-193-P1a  Lch-Mir-193-P1a  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Loc-Mir-193-P1a  Mdo-Mir-193-P1a  Mgi-Mir-193-P1  Mml-Mir-193-P1a  Mmr-Mir-193-P1a  Mmu-Mir-193-P1a  Mom-Mir-193-P1  Mun-Mir-193-P1a  Npo-Mir-193-P1  Oan-Mir-193-P1a  Obi-Mir-193-P1  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pab-Mir-193-P1a  Pau-Mir-193-P1  Pbv-Mir-193-P1a  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rno-Mir-193-P1a  Rph-Mir-193-P1  Sha-Mir-193-P1a  Snu-Mir-193-P1  Spt-Mir-193-P1a  Sto-Mir-193-P1a  Tca-Mir-193-P1  Tgu-Mir-193-P1a  War-Mir-193-P1  Xbo-Mir-193-P1  Xla-Mir-193-P1a3  Xla-Mir-193-P1a4  Xtr-Mir-193-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(oryCun2_add)		 chr6: 7412259-7412317 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1a)		 Mir-193-P1a chr6: 7412259-7412317 [+] UCSC Ensembl
Mir-193-P2a chr6: 7416450-7416510 [+] UCSC Ensembl
Seed ACUGGCC
Precursor
(pre-Mir +30nt flank)		 
GCAAGGGGUUGGAGGCUGUGGGCCCAGAAUCGGGGUUUUGAGGGCGAGAUGAGUUUAUGUUUUAUCCAACUGGCCCACAAAGUCCCGCUUUUGGGGUCAUUCAGAACAGCGAGCGAUUC
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Structure
        10          20        30        40        50         
GCAAGGGGUUGGAGGCU--|   G       U    GU    A    G  A  AGUUUAU 
                   GUGG CCCAGAA CGGG  UUUG GGGC AG UG       \
                   UACU GGGUUUU GCCC  AAAC CCCG UC AC       G
CUUAGCGAGCGACAAGACU^   G       C    UG    A    G  A  CUAUUUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Star sequence

Ocu-Mir-193-P1a_5p*
mirBase accessionMIMAT0048305
Sequence 
0- CGGGGUUUUGAGGGCGAGAUGA -22
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Mature sequence

Ocu-Mir-193-P1a_3p
mirBase accessionMIMAT0048306
Sequence 
37- AACUGGCCCACAAAGUCCCGCU -59
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