MirGeneDB ID | Pab-Mir-193-P1a |
Family name |
MIR-193 (all species) |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-193-P1b
Pab-Mir-193-P2a
Pab-Mir-193-P2b
|
Orthologues |
Aae-Mir-193-P1
Aga-Mir-193-P1
Ami-Mir-193-P1a
Bge-Mir-193-P1
Bta-Mir-193-P1a
Cbr-Mir-193-P1-v1
Cel-Mir-193-P1-v1
Cfa-Mir-193-P1a
Cja-Mir-193-P1a
Cli-Mir-193-P1a
Cmi-Mir-193-P1a
Cpi-Mir-193-P1a
Cpo-Mir-193-P1a
Cte-Mir-193-P1
Dan-Mir-193-P1-v1
Dgr-Mir-193-P1
Dlo-Mir-193-P1
Dma-Mir-193-P1
Dme-Mir-193-P1-v1
Dmo-Mir-193-P1-v1
Dno-Mir-193-P1a
Dpu-Mir-193-P1
Dre-Mir-193-P1a
Dsi-Mir-193-P1-v1
Dya-Mir-193-P1-v1
Eba-Mir-193-P1
Eca-Mir-193-P1a
Esc-Mir-193-P1
Ete-Mir-193-P1a
Gga-Mir-193-P1a
Gpa-Mir-193-P1
Hme-Mir-193-P1
Hru-Mir-193-P1
Hsa-Mir-193-P1a
Isc-Mir-193-P1
Laf-Mir-193-P1a
Lch-Mir-193-P1a
Lgi-Mir-193-P1
Lhy-Mir-193-P1
Loc-Mir-193-P1a
Mdo-Mir-193-P1a
Mgi-Mir-193-P1
Mml-Mir-193-P1a
Mmr-Mir-193-P1a
Mmu-Mir-193-P1a
Mom-Mir-193-P1
Mun-Mir-193-P1a
Npo-Mir-193-P1
Oan-Mir-193-P1a
Obi-Mir-193-P1
Ocu-Mir-193-P1a
Ofu-Mir-193-P1
Ovu-Mir-193-P1
Pau-Mir-193-P1
Pbv-Mir-193-P1a
Pcr-Mir-193-P1
Pma-Mir-193-P1
Pmi-Mir-193-P1
Pve-Mir-193-P1
Rno-Mir-193-P1a
Rph-Mir-193-P1
Sha-Mir-193-P1a
Snu-Mir-193-P1
Spt-Mir-193-P1a
Sto-Mir-193-P1a
Tca-Mir-193-P1
Tgu-Mir-193-P1a
War-Mir-193-P1
Xbo-Mir-193-P1
Xla-Mir-193-P1a3
Xla-Mir-193-P1a4
Xtr-Mir-193-P1a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054697.2: 14028565-14028623 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-193-P1a) |
Mir-193-P2a
CM054697.2: 14023242-14023302 [-]
UCSC
Ensembl
Mir-193-P1a
CM054697.2: 14028565-14028623 [-]
UCSC
Ensembl
|
Seed |
ACUGGCC |
Precursor (pre-Mir +30nt flank) |
AGAGGCUUUUGGAGGUUGUGGUCUCAGAAUCGGGGUUUUGAGGGCGAGAUGAGUUUAUGUUUUAUCCAACUGGCCCUCAAAGUCCCGCUUUUGGGGUCAUUCUGGACAGCGAGGGACUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAGGCUUUUGGAGGUU--| GU U GU G A AGUUUAU
GUG CUCAGAA CGGG UUUGAGGGC AG UG \
UAC GGGUUUU GCCC AAACUCCCG UC AC G
CUCAGGGAGCGACAGGUCU^ UG C UG G A CUAUUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pab-Mir-193-P1a_5p* |
mirBase accession | None |
Sequence |
0- CGGGGUUUUGAGGGCGAGAUGA -22
Get sequence
|
Mature sequence |
Pab-Mir-193-P1a_3p |
mirBase accession | None |
Sequence |
37- AACUGGCCCUCAAAGUCCCGCU -59
Get sequence
|