MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-193-P1a3

Family name MIR-193 (all species)
Seed ACUGGCC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-193-P1a4  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4 
Orthologues Aae-Mir-193-P1  Ami-Mir-193-P1a  Bge-Mir-193-P1  Bta-Mir-193-P1a  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cfa-Mir-193-P1a  Cgi-Mir-193-P1  Cli-Mir-193-P1a  Cmi-Mir-193-P1a  Cpi-Mir-193-P1a  Cpo-Mir-193-P1a  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dno-Mir-193-P1a  Dpu-Mir-193-P1  Dre-Mir-193-P1a  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Esc-Mir-193-P1  Ete-Mir-193-P1a  Gga-Mir-193-P1a  Hme-Mir-193-P1  Hsa-Mir-193-P1a  Isc-Mir-193-P1  Lch-Mir-193-P1a  Lgi-Mir-193-P1  Loc-Mir-193-P1a  Mdo-Mir-193-P1a  Mml-Mir-193-P1a  Mmu-Mir-193-P1a  Mun-Mir-193-P1a  Npo-Mir-193-P1  Oan-Mir-193-P1a  Obi-Mir-193-P1  Ocu-Mir-193-P1a  Ovu-Mir-193-P1  Pbv-Mir-193-P1a  Pma-Mir-193-P1  Pmi-Mir-193-P1  Rno-Mir-193-P1a  Sha-Mir-193-P1a  Spt-Mir-193-P1a  Sto-Mir-193-P1a  Tca-Mir-193-P1  Tgu-Mir-193-P1a  Xbo-Mir-193-P1  Xtr-Mir-193-P1a 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030740.1: 89712933-89712991 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAGCGCGUGACCAGUGUGCUUUCGGAGUCGGGAUUUUGGGGGCGAGAUGAGCUAAUGAUUUAUCCAACUGGCCCGCAAAGUCCCGCUUCUGGAAGUCACUUUGUUCUGCAAGUAAAA
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Structure
        10         20         30        40        50         
ACCAGCGCGUGACCAGU-   -|        U          G    G  A  AGCUAAU 
                  GUG CUUUCGGAG CGGGAUUUUG GGGC AG UG       \
                  CAC GAAGGUCUU GCCCUGAAAC CCCG UC AC       G
AAAAUGAACGUCUUGUUU   U^        C          G    G  A  CUAUUUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-193-P1a3_5p*

mirBase accessionNone
Sequence
0- CGGGAUUUUGGGGGCGAGAUGA -22
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Mature sequence

Xla-Mir-193-P1a3_3p

mirBase accessionNone
Sequence
37- AACUGGCCCGCAAAGUCCCGCU -59
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