MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-193-P1a

Family name MIR-193 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-193
Paralogues Xtr-Mir-193-P2a 
Orthologues Aae-Mir-193-P1  Aga-Mir-193-P1  Ami-Mir-193-P1a  Bge-Mir-193-P1  Bta-Mir-193-P1a  Cbr-Mir-193-P1-v1  Cel-Mir-193-P1-v1  Cfa-Mir-193-P1a  Cja-Mir-193-P1a  Cli-Mir-193-P1a  Cmi-Mir-193-P1a  Cpi-Mir-193-P1a  Cpo-Mir-193-P1a  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dmo-Mir-193-P1-v1  Dno-Mir-193-P1a  Dpu-Mir-193-P1  Dre-Mir-193-P1a  Dsi-Mir-193-P1-v1  Dya-Mir-193-P1-v1  Eba-Mir-193-P1  Eca-Mir-193-P1a  Esc-Mir-193-P1  Ete-Mir-193-P1a  Gga-Mir-193-P1a  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Hsa-Mir-193-P1a  Isc-Mir-193-P1  Laf-Mir-193-P1a  Lch-Mir-193-P1a  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Loc-Mir-193-P1a  Mdo-Mir-193-P1a  Mgi-Mir-193-P1  Mml-Mir-193-P1a  Mmr-Mir-193-P1a  Mmu-Mir-193-P1a  Mom-Mir-193-P1  Mun-Mir-193-P1a  Npo-Mir-193-P1  Oan-Mir-193-P1a  Obi-Mir-193-P1  Ocu-Mir-193-P1a  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pab-Mir-193-P1a  Pau-Mir-193-P1  Pbv-Mir-193-P1a  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rno-Mir-193-P1a  Rph-Mir-193-P1  Sha-Mir-193-P1a  Snu-Mir-193-P1  Spt-Mir-193-P1a  Sto-Mir-193-P1a  Tca-Mir-193-P1  Tgu-Mir-193-P1a  War-Mir-193-P1  Xbo-Mir-193-P1  Xla-Mir-193-P1a3  Xla-Mir-193-P1a4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr9: 32323003-32323061 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1a)		 Mir-193-P2a chr9: 32274432-32274492 [-] UCSC Ensembl
Mir-193-P1a chr9: 32323003-32323061 [-] UCSC Ensembl
Seed ACUGGCC
Precursor
(pre-Mir +30nt flank)		 
ACCAACGCGUGACUAGUGUGGUUUCGGAGUCGGGAUUUUGGGGGCGAGAUGAGCUAAUGAUUUAUCCAACUGGCCCGCAAAGUCCCGCUUCUGGAAGUCACUUUGUUCUGCAAGUAAAA
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Structure
        10         20         30        40        50         
ACCAACGCGUGACUAGU-    -|       U          G    G  A  AGCUAAU 
                  GUGG UUUCGGAG CGGGAUUUUG GGGC AG UG       \
                  CACU AAGGUCUU GCCCUGAAAC CCCG UC AC       G
AAAAUGAACGUCUUGUUU    G^       C          G    G  A  CUAUUUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-193-P1a_5p*
mirBase accessionNone
Sequence 
0- CGGGAUUUUGGGGGCGAGAUGA -22
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Mature sequence

Xtr-Mir-193-P1a_3p
mirBase accessionMIMAT0003616
Sequence 
37- AACUGGCCCGCAAAGUCCCGCU -59
Get sequence
Proposed targets TargetScanVert: xtr-miR-193