Mir-193-P1a

MirGeneDB ID

Gga-Mir-193-P1a

Family name

MIR-193 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-193b

Paralogues

Gga-Mir-193-P1b Gga-Mir-193-P2a Gga-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Ami-Mir-193-P1a Bge-Mir-193-P1 Bta-Mir-193-P1a Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cfa-Mir-193-P1a Cja-Mir-193-P1a Cli-Mir-193-P1a Cmi-Mir-193-P1a Cpi-Mir-193-P1a Cpo-Mir-193-P1a Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dno-Mir-193-P1a Dpu-Mir-193-P1 Dre-Mir-193-P1a Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Eca-Mir-193-P1a Esc-Mir-193-P1 Ete-Mir-193-P1a Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1a Isc-Mir-193-P1 Laf-Mir-193-P1a Lch-Mir-193-P1a Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1a Mdo-Mir-193-P1a Mgi-Mir-193-P1 Mml-Mir-193-P1a Mmr-Mir-193-P1a Mmu-Mir-193-P1a Mom-Mir-193-P1 Mun-Mir-193-P1a Npo-Mir-193-P1 Oan-Mir-193-P1a Obi-Mir-193-P1 Ocu-Mir-193-P1a Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1a Pau-Mir-193-P1 Pbv-Mir-193-P1a Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1a Rph-Mir-193-P1 Sha-Mir-193-P1a Snu-Mir-193-P1 Spt-Mir-193-P1a Sto-Mir-193-P1a Tca-Mir-193-P1 Tgu-Mir-193-P1a War-Mir-193-P1 Xbo-Mir-193-P1 Xla-Mir-193-P1a3 Xla-Mir-193-P1a4 Xtr-Mir-193-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

14: 1167562-1167620 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1a)

Mir-193-P1a 14: 1167562-1167620 [+] UCSC Ensembl
Mir-193-P2a 14: 1172380-1172440 [+] UCSC Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

UUGAAUCUCAGAAGGCUGUGGUUCCAGAGUCGGGGUUUUGGGGGCGAGAUGAGCUUAUGUUUUAUCCAACUGGCCCACAAAGUCCCGCUUUUGGUGGUCACUUUGUUCUGCAAAGGAAA

Get precursor sequence

Structure

        10         20         30        40        50         
UUGAAUCUCAGAAGGCU-   GU -|     U    GU    G    G  A  AGCUUAU 
                  GUG  U CCAGAG CGGG  UUUG GGGC AG UG       \
                  CAC  G GGUUUU GCCC  AAAC CCCG UC AC       G
AAAGGAAACGUCUUGUUU   UG U^     C    UG    A    G  A  CUAUUUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-193-P1a_5p*

mirBase accession

MIMAT0026629

Sequence

0- CGGGGUUUUGGGGGCGAGAUGA -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-193b-5p
miRDB: MIMAT0026629

Mature sequence

Gga-Mir-193-P1a_3p

mirBase accession

MIMAT0003353

Sequence

37- AACUGGCCCACAAAGUCCCGCU -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-193b-3p
miRDB: MIMAT0003353