Mir-193-P1a

MirGeneDB ID

Loc-Mir-193-P1a

Family name

MIR-193 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-193-P1b Loc-Mir-193-P1b-as Loc-Mir-193-P2a Loc-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Ami-Mir-193-P1a Bge-Mir-193-P1 Bta-Mir-193-P1a Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cfa-Mir-193-P1a Cja-Mir-193-P1a Cli-Mir-193-P1a Cmi-Mir-193-P1a Cpi-Mir-193-P1a Cpo-Mir-193-P1a Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dno-Mir-193-P1a Dpu-Mir-193-P1 Dre-Mir-193-P1a Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Eca-Mir-193-P1a Esc-Mir-193-P1 Ete-Mir-193-P1a Gga-Mir-193-P1a Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1a Isc-Mir-193-P1 Laf-Mir-193-P1a Lch-Mir-193-P1a Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mdo-Mir-193-P1a Mgi-Mir-193-P1 Mml-Mir-193-P1a Mmr-Mir-193-P1a Mmu-Mir-193-P1a Mom-Mir-193-P1 Mun-Mir-193-P1a Npo-Mir-193-P1 Oan-Mir-193-P1a Obi-Mir-193-P1 Ocu-Mir-193-P1a Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1a Pau-Mir-193-P1 Pbv-Mir-193-P1a Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1a Rph-Mir-193-P1 Sha-Mir-193-P1a Snu-Mir-193-P1 Spt-Mir-193-P1a Sto-Mir-193-P1a Tca-Mir-193-P1 Tgu-Mir-193-P1a War-Mir-193-P1 Xbo-Mir-193-P1 Xla-Mir-193-P1a3 Xla-Mir-193-P1a4 Xtr-Mir-193-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG13: 139897-139955 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1a)

Mir-193-P2a LG13: 139122-139182 [-] Ensembl
Mir-193-P1a LG13: 139897-139955 [-] Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

CUCUUUGUUCCGUCAUUGUGAUUUCAGAUGCGGGAUUUUGGGGGCGAGAUGAGUUUUAUCCCAGUCCAACUGGCCCGCAAAGUCCCGCUUCUGUGCUUCACAGUUUCAACACGAAUACG

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Structure

        10         20         30        40        50         
CUCUUUGUUCCGUCAUU-    UUU-|   U           G    G  A  AGUUUUA 
                  GUGA    CAGA GCGGGAUUUUG GGGC AG UG       \
                  CACU    GUCU CGCCCUGAAAC CCCG UC AC       U
GCAUAAGCACAACUUUGA    UCGU^   U           G    G  A  CUGACCC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-193-P1a_5p*

mirBase accession

None

Sequence

0- CGGGAUUUUGGGGGCGAGAUGA -22

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Mature sequence

Loc-Mir-193-P1a_3p

mirBase accession

None

Sequence

37- AACUGGCCCGCAAAGUCCCGCU -59

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