MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-193-P1b

Family name MIR-193 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-193-P1a  Loc-Mir-193-P1b-as  Loc-Mir-193-P2a  Loc-Mir-193-P2b 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1b  Aga-Mir-193-P1  Ami-Mir-193-P1b  Bge-Mir-193-P1  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cel-Mir-193-P1-v1  Cfa-Mir-193-P1b  Cja-Mir-193-P1b  Cmi-Mir-193-P1b  Cpi-Mir-193-P1b  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dmo-Mir-193-P1-v1  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dre-Mir-193-P1b1  Dre-Mir-193-P1b2  Dsi-Mir-193-P1-v1  Dya-Mir-193-P1-v1  Eba-Mir-193-P1  Eca-Mir-193-P1b  Esc-Mir-193-P1  Ete-Mir-193-P1b  Gga-Mir-193-P1b  Gja-Mir-193-P1b  Gmo-Mir-193-P1b2  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Laf-Mir-193-P1b  Lch-Mir-193-P1b  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Mal-Mir-193-P1b2  Mdo-Mir-193-P1b  Mgi-Mir-193-P1  Mml-Mir-193-P1b  Mmr-Mir-193-P1b  Mmu-Mir-193-P1b  Mom-Mir-193-P1  Mun-Mir-193-P1b  Neu-Mir-193-P1b  Npo-Mir-193-P1  Oan-Mir-193-P1b  Obi-Mir-193-P1  Ocu-Mir-193-P1b  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pab-Mir-193-P1b  Pau-Mir-193-P1  Pbv-Mir-193-P1b  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rno-Mir-193-P1b  Rph-Mir-193-P1  Sha-Mir-193-P1b  Snu-Mir-193-P1  Spt-Mir-193-P1b  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1b  Tni-Mir-193-P1b2  War-Mir-193-P1  Xbo-Mir-193-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG10: 41575615-41575677 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1b)		 Mir-193-P1b-as LG10: 41575613-41575675 [-] Ensembl
Mir-193-P1b LG10: 41575615-41575677 [+] Ensembl
Mir-193-P2b LG10: 41579744-41579805 [+] Ensembl
Seed ACUGGCC
Precursor
(pre-Mir +30nt flank)		 
CCCUGCGGCGAGUGUGUGCGCGACAGGGGCUGGGUCUUUGCGGGCGAGGUGAGGUCUGUUCCCCUCUCUCAACUGGCCCUACAAAGUCCCAGUCCCUGGGGCGCCCGACCGGCGCGGCCCCCU
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Structure
        10          20        30        40         50        60
CCCUGCGGCGAGUGUGU--    GA           U     C-|   G  G   GGUCUGU 
                   GCGC  CAGGGGCUGGG CUUUG  GGGC AG UGA       U
                   CGCG  GUCCCUGACCC GAAAC  CCCG UC ACU       C
UCCCCCGGCGCGGCCAGCC    GG           U     AU^   G  A   CUCUCCC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-193-P1b_5p*
mirBase accessionNone
Sequence 
0- UGGGUCUUUGCGGGCGAGGUGA -22
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Mature sequence

Loc-Mir-193-P1b_3p
mirBase accessionNone
Sequence 
40- AACUGGCCCUACAAAGUCCCAGU -63
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