MirGeneDB ID | Loc-Mir-193-P1b |
Family name |
MIR-193 (all species) |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-193-P1a
Loc-Mir-193-P1b-as
Loc-Mir-193-P2a
Loc-Mir-193-P2b
|
Orthologues |
Aae-Mir-193-P1
Aca-Mir-193-P1b
Aga-Mir-193-P1
Ami-Mir-193-P1b
Bge-Mir-193-P1
Bta-Mir-193-P1b
Cbr-Mir-193-P1-v1
Cel-Mir-193-P1-v1
Cfa-Mir-193-P1b
Cja-Mir-193-P1b
Cmi-Mir-193-P1b
Cpi-Mir-193-P1b
Cpo-Mir-193-P1b
Cte-Mir-193-P1
Dan-Mir-193-P1-v1
Dgr-Mir-193-P1
Dlo-Mir-193-P1
Dma-Mir-193-P1
Dme-Mir-193-P1-v1
Dmo-Mir-193-P1-v1
Dno-Mir-193-P1b
Dpu-Mir-193-P1
Dre-Mir-193-P1b1
Dre-Mir-193-P1b2
Dsi-Mir-193-P1-v1
Dya-Mir-193-P1-v1
Eba-Mir-193-P1
Eca-Mir-193-P1b
Esc-Mir-193-P1
Ete-Mir-193-P1b
Gga-Mir-193-P1b
Gja-Mir-193-P1b
Gmo-Mir-193-P1b2
Gpa-Mir-193-P1
Hme-Mir-193-P1
Hru-Mir-193-P1
Hsa-Mir-193-P1b
Isc-Mir-193-P1
Laf-Mir-193-P1b
Lch-Mir-193-P1b
Lgi-Mir-193-P1
Lhy-Mir-193-P1
Mal-Mir-193-P1b2
Mdo-Mir-193-P1b
Mgi-Mir-193-P1
Mml-Mir-193-P1b
Mmr-Mir-193-P1b
Mmu-Mir-193-P1b
Mom-Mir-193-P1
Mun-Mir-193-P1b
Neu-Mir-193-P1b
Npo-Mir-193-P1
Oan-Mir-193-P1b
Obi-Mir-193-P1
Ocu-Mir-193-P1b
Ofu-Mir-193-P1
Ovu-Mir-193-P1
Pab-Mir-193-P1b
Pau-Mir-193-P1
Pbv-Mir-193-P1b
Pcr-Mir-193-P1
Pma-Mir-193-P1
Pmi-Mir-193-P1
Pve-Mir-193-P1
Rno-Mir-193-P1b
Rph-Mir-193-P1
Sha-Mir-193-P1b
Snu-Mir-193-P1
Spt-Mir-193-P1b
Sto-Mir-193-P1b
Tca-Mir-193-P1
Tgu-Mir-193-P1b
Tni-Mir-193-P1b2
War-Mir-193-P1
Xbo-Mir-193-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (LepOcu1) |
LG10: 41575615-41575677 [+]
Ensembl
|
Clustered miRNAs (< 50kb from Mir-193-P1b) |
Mir-193-P1b-as
LG10: 41575613-41575675 [-]
Ensembl
Mir-193-P1b
LG10: 41575615-41575677 [+]
Ensembl
Mir-193-P2b
LG10: 41579744-41579805 [+]
Ensembl
|
Seed |
ACUGGCC |
Precursor (pre-Mir +30nt flank) |
CCCUGCGGCGAGUGUGUGCGCGACAGGGGCUGGGUCUUUGCGGGCGAGGUGAGGUCUGUUCCCCUCUCUCAACUGGCCCUACAAAGUCCCAGUCCCUGGGGCGCCCGACCGGCGCGGCCCCCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCUGCGGCGAGUGUGU-- GA U C-| G G GGUCUGU
GCGC CAGGGGCUGGG CUUUG GGGC AG UGA U
CGCG GUCCCUGACCC GAAAC CCCG UC ACU C
UCCCCCGGCGCGGCCAGCC GG U AU^ G A CUCUCCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-193-P1b_5p* |
mirBase accession | None |
Sequence |
0- UGGGUCUUUGCGGGCGAGGUGA -22
Get sequence
|
Mature sequence |
Loc-Mir-193-P1b_3p |
mirBase accession | None |
Sequence |
40- AACUGGCCCUACAAAGUCCCAGU -63
Get sequence
|