MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-193-P1b1

Family name MIR-193 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-193a-1
Paralogues Dre-Mir-193-P1a  Dre-Mir-193-P1b2  Dre-Mir-193-P2a  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2 
Orthologues Aae-Mir-193-P1  Aca-Mir-193-P1b  Aga-Mir-193-P1  Ami-Mir-193-P1b  Bge-Mir-193-P1  Bta-Mir-193-P1b  Cbr-Mir-193-P1-v1  Cel-Mir-193-P1-v1  Cfa-Mir-193-P1b  Cja-Mir-193-P1b  Cmi-Mir-193-P1b  Cpi-Mir-193-P1b  Cpo-Mir-193-P1b  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dmo-Mir-193-P1-v1  Dno-Mir-193-P1b  Dpu-Mir-193-P1  Dsi-Mir-193-P1-v1  Dya-Mir-193-P1-v1  Eba-Mir-193-P1  Eca-Mir-193-P1b  Esc-Mir-193-P1  Ete-Mir-193-P1b  Gga-Mir-193-P1b  Gja-Mir-193-P1b  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Hsa-Mir-193-P1b  Isc-Mir-193-P1  Laf-Mir-193-P1b  Lch-Mir-193-P1b  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Loc-Mir-193-P1b  Loc-Mir-193-P1b-as  Mdo-Mir-193-P1b  Mgi-Mir-193-P1  Mml-Mir-193-P1b  Mmr-Mir-193-P1b  Mmu-Mir-193-P1b  Mom-Mir-193-P1  Mun-Mir-193-P1b  Neu-Mir-193-P1b  Npo-Mir-193-P1  Oan-Mir-193-P1b  Obi-Mir-193-P1  Ocu-Mir-193-P1b  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pab-Mir-193-P1b  Pau-Mir-193-P1  Pbv-Mir-193-P1b  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rno-Mir-193-P1b  Rph-Mir-193-P1  Sha-Mir-193-P1b  Snu-Mir-193-P1  Spt-Mir-193-P1b  Sto-Mir-193-P1b  Tca-Mir-193-P1  Tgu-Mir-193-P1b  War-Mir-193-P1  Xbo-Mir-193-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr3: 35959932-35959993 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P1b1)		 Mir-193-P1b1 chr3: 35959932-35959993 [+] UCSC Ensembl
Mir-193-P2b1 chr3: 35961005-35961067 [+] UCSC Ensembl
Seed ACUGGCC
Precursor
(pre-Mir +30nt flank)		 
UAGGGUUAAAGACAUUAAUGUGUUAGAGGUUGGGUCUUUGCGGGCAAGGUGAGUAGUUAAAUUUACUCUCAACUGGCCUACAAAGUCCCAGUUUCUGGCUCAUGUUAUCAUCCUCACUUAUU
Get precursor sequence
Structure
        10          20        30        40        50        60
UAGGGUUAAAGACAUUA--|  U      GG     U     CG   A  G   GUAGUUA 
                   AUG GUUAGA  UUGGG CUUUG  GGC AG UGA       A
                   UAC CGGUCU  GACCC GAAAC  CCG UC ACU       A
UUAUUCACUCCUACUAUUG^  U      UU     U     AU   G  A   CUCAUUU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-193-P1b1_5p*
mirBase accessionMIMAT0031981
Sequence 
0- UGGGUCUUUGCGGGCAAGGUGA -22
Get sequence
Mature sequence

Dre-Mir-193-P1b1_3p
mirBase accessionMIMAT0001856
Sequence 
40- AACUGGCCUACAAAGUCCCAGU -62
Get sequence
Proposed targets TargetScanFish: dre-miR-193a