MirGeneDB ID | Dre-Mir-193-P2b2 |
Family name |
MIR-193 (all species) |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-365-3
|
Paralogues |
Dre-Mir-193-P1a
Dre-Mir-193-P1b1
Dre-Mir-193-P1b2
Dre-Mir-193-P2a
Dre-Mir-193-P2b1
|
Orthologues |
Aca-Mir-193-P2b
Ami-Mir-193-P2b
Bge-Mir-193-P2
Bta-Mir-193-P2b
Cbr-Mir-193-P2-v1
Cel-Mir-193-P2-v1
Cfa-Mir-193-P2b
Cja-Mir-193-P2b
Cli-Mir-193-P2b
Cmi-Mir-193-P2b
Cpi-Mir-193-P2b
Cpo-Mir-193-P2b
Cte-Mir-193-P2
Dgr-Mir-193-P2
Dlo-Mir-193-P2
Dno-Mir-193-P2b
Ebu-Mir-193-P2
Eca-Mir-193-P2b
Ete-Mir-193-P2b
Gga-Mir-193-P2b
Gja-Mir-193-P2b
Gmo-Mir-193-P2b2
Hme-Mir-193-P2
Hru-Mir-193-P2
Hsa-Mir-193-P2b
Laf-Mir-193-P2b
Lch-Mir-193-P2b
Lgi-Mir-193-P2
Llo-Mir-193-P2-v1
Loc-Mir-193-P2b
Mal-Mir-193-P2b2
Mgi-Mir-193-P2
Mml-Mir-193-P2b
Mmr-Mir-193-P2b
Mmu-Mir-193-P2b
Mun-Mir-193-P2b
Neu-Mir-193-P2b
Oan-Mir-193-P2b
Ocu-Mir-193-P2b
Pab-Mir-193-P2b
Pau-Mir-193-P2
Pbv-Mir-193-P2b
Pdu-Mir-193-P2
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Pve-Mir-193-P2
Rno-Mir-193-P2b
Rph-Mir-193-P2
Sha-Mir-193-P2b
Sko-Mir-193-P2
Snu-Mir-193-P2
Spt-Mir-193-P2b
Spu-Mir-193-P2
Sro-Mir-193-P2
Sto-Mir-193-P2b
Tca-Mir-193-P2
Tgu-Mir-193-P2b
Tni-Mir-193-P2b2
Xbo-Mir-193-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (danRer11) |
chr6: 18516330-18516392 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-193-P2b2) |
Mir-193-P2b2
chr6: 18516330-18516392 [-]
UCSC
Ensembl
Mir-193-P1b2
chr6: 18517992-18518050 [-]
UCSC
Ensembl
|
Seed |
AAUGCCC |
Precursor (pre-Mir +30nt flank) |
GAAACUGCAAAAAAAGUCAGCAAGAAAAGUGAGGGACUUUUAGGGGCAGCUGUGUUAUACUGACCCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAGUGCUCAACAAUUCGCUGCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAAACUGCAAAAAAAGUCA--| AA AC GC UUAUACU
GCAAGA AGUGAGGG UUUUAGGGGCA UGUG \
CGUUCU UUAUUCCU AAAAUCCCCGU AUAC G
UCGUCGCUUAACAACUCGUGA^ CG A- A- UGACCCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Star sequence |
Dre-Mir-193-P2b2_5p* |
mirBase accession | None |
Sequence |
0- GAGGGACUUUUAGGGGCAGCUGUG -24
Get sequence
|
Mature sequence |
Dre-Mir-193-P2b2_3p |
mirBase accession | MIMAT0001875 |
Sequence |
41- UAAUGCCCCUAAAAAUCCUUAU -63
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-365
|