MirGeneDB 2.1

MirGeneDB ID

Mun-Mir-193-P2b

Family name MIR-193 (all species)
Seed AAUGCCC
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-193-P1a  Mun-Mir-193-P1b  Mun-Mir-193-P2a 
Orthologues Aca-Mir-193-P2b  Ami-Mir-193-P2b  Bge-Mir-193-P2  Bta-Mir-193-P2b  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2b  Cgi-Mir-193-P2  Cli-Mir-193-P2b  Cmi-Mir-193-P2b  Cpi-Mir-193-P2b  Cpo-Mir-193-P2b  Cte-Mir-193-P2  Dno-Mir-193-P2b  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2  Ebu-Mir-193-P2  Ete-Mir-193-P2b  Gga-Mir-193-P2b  Gja-Mir-193-P2b  Gmo-Mir-193-P2b2  Hme-Mir-193-P2  Hsa-Mir-193-P2b  Lch-Mir-193-P2b  Lgi-Mir-193-P2  Loc-Mir-193-P2b  Mal-Mir-193-P2b2  Mml-Mir-193-P2b  Mmu-Mir-193-P2b  Oan-Mir-193-P2b  Ocu-Mir-193-P2b  Pbv-Mir-193-P2b  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Rno-Mir-193-P2b  Sha-Mir-193-P2b  Sko-Mir-193-P2  Spt-Mir-193-P2b  Spu-Mir-193-P2  Sto-Mir-193-P2b  Tca-Mir-193-P2  Tgu-Mir-193-P2b  Tni-Mir-193-P2b2  Xbo-Mir-193-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(Mun_miRNA_loci)
193-P2b_LR594637.1:326458278-326458540: 101-163 [+]
Precursor
(pre-Mir +30nt flank)
GACAAAAAUCAAAGAGGCAGCAAGAAAAAUGAGGGACUUUCAGGGGCAGCUGUGUUUUACUAACCCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAAUGUUCGACCAUAGCAUUCA
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Structure
        10          20        30        40        50        60  
GACAAAAAUCAAAGAGGCA--|      A        AC   C       GC    UUUUACU 
                     GCAAGAA AAUGAGGG  UUU AGGGGCA  UGUG       \
                     CGUUCUU UUAUUCCU  AAA UCCCCGU  AUAC       A
ACUUACGAUACCAGCUUGUAA^      G        AA   -       A-    UGACCCA 
 120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Mun-Mir-193-P2b_5p*

mirBase accessionNone
Sequence
0- GAGGGACUUUCAGGGGCAGCUGUG -24
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Mature sequence

Mun-Mir-193-P2b_3p

mirBase accessionNone
Sequence
41- UAAUGCCCCUAAAAAUCCUUAU -63
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