MirGeneDB ID | Mal-Mir-193-P2b2 |
Family name |
MIR-193 (all species) |
Seed |
AAUGCCC |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Mir-193-P1b2
|
Orthologues |
Aca-Mir-193-P2b
Ami-Mir-193-P2b
Bge-Mir-193-P2
Bta-Mir-193-P2b
Cbr-Mir-193-P2-v1
Cbr-Mir-193-P2-v2
Cel-Mir-193-P2-v1
Cel-Mir-193-P2-v2
Cfa-Mir-193-P2b
Cgi-Mir-193-P2
Cli-Mir-193-P2b
Cmi-Mir-193-P2b
Cpi-Mir-193-P2b
Cpo-Mir-193-P2b
Cte-Mir-193-P2
Dno-Mir-193-P2b
Dre-Mir-193-P2b2
Ebu-Mir-193-P2
Ete-Mir-193-P2b
Gga-Mir-193-P2b
Gja-Mir-193-P2b
Gmo-Mir-193-P2b2
Hme-Mir-193-P2
Hsa-Mir-193-P2b
Lch-Mir-193-P2b
Lgi-Mir-193-P2
Loc-Mir-193-P2b
Mml-Mir-193-P2b
Mmu-Mir-193-P2b
Mun-Mir-193-P2b
Oan-Mir-193-P2b
Ocu-Mir-193-P2b
Pbv-Mir-193-P2b
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Rno-Mir-193-P2b
Sha-Mir-193-P2b
Sko-Mir-193-P2
Spt-Mir-193-P2b
Spu-Mir-193-P2
Sto-Mir-193-P2b
Tca-Mir-193-P2
Tgu-Mir-193-P2b
Tni-Mir-193-P2b2
Xbo-Mir-193-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884720.1: 402380-402441 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAGAGAAAGAAAAGGCAGCAAGAAAAGUGAGGGACUUUUAGGGGCAGCUGUGUUUUAUUAACCCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAAUGGUCAACAAAUCUCCAGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAGAGAAAGAAAAGGCA---| AA AC GC UUUUAUU
GCAAGA AGUGAGGG UUUUAGGGGCA UGUG \
CGUUCU UUAUUCCU AAAAUCCCCGU AUAC A
UGACCUCUAAACAACUGGUAA^ CG A- A- UGACCCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Mal-Mir-193-P2b2_5p* |
mirBase accession | None |
Sequence |
0- AGGGACUUUUAGGGGCAGCUGUG -23
Get sequence
|
Mature sequence |
Mal-Mir-193-P2b2_3p |
mirBase accession | None |
Sequence |
40- UAAUGCCCCUAAAAAUCCUUAU -62
Get sequence
|