MirGeneDB ID | Spt-Mir-193-P2b |
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Family name | MIR-193 (all species) |
Seed | AAUGCCC |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-193-P1a Spt-Mir-193-P1b Spt-Mir-193-P2a |
Orthologues | Aca-Mir-193-P2b Ami-Mir-193-P2b Bge-Mir-193-P2 Bta-Mir-193-P2b Cbr-Mir-193-P2-v1 Cbr-Mir-193-P2-v2 Cel-Mir-193-P2-v1 Cel-Mir-193-P2-v2 Cfa-Mir-193-P2b Cgi-Mir-193-P2 Cli-Mir-193-P2b Cmi-Mir-193-P2b Cpi-Mir-193-P2b Cpo-Mir-193-P2b Cte-Mir-193-P2 Dno-Mir-193-P2b Dre-Mir-193-P2b1 Dre-Mir-193-P2b2 Ebu-Mir-193-P2 Ete-Mir-193-P2b Gga-Mir-193-P2b Gja-Mir-193-P2b Gmo-Mir-193-P2b2 Hme-Mir-193-P2 Hsa-Mir-193-P2b Lch-Mir-193-P2b Lgi-Mir-193-P2 Loc-Mir-193-P2b Mal-Mir-193-P2b2 Mml-Mir-193-P2b Mmu-Mir-193-P2b Mun-Mir-193-P2b Oan-Mir-193-P2b Ocu-Mir-193-P2b Pbv-Mir-193-P2b Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Rno-Mir-193-P2b Sha-Mir-193-P2b Sko-Mir-193-P2 Spu-Mir-193-P2 Sto-Mir-193-P2b Tca-Mir-193-P2 Tgu-Mir-193-P2b Tni-Mir-193-P2b2 Xbo-Mir-193-P2 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01005108.1: 2978534-2978595 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GGAGGGCACUGAGAGGCAGCAAGAAAAAUGAGGGACUUUCAGGGGCAGCUGUGUUUUACUAACCCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAAUGUUCGACUGGGAGCGUCGGet precursor sequence |
Structure | 10 20 30 40 50 60 GGAGGGCACUGAGAGGCA---| A AC C GC UUUUACU GCAAGAA AAUGAGGG UUU AGGGGCA UGUG \ CGUUCUU UUAUUCCU AAA UCCCCGU AUAC A GCUGCGAGGGUCAGCUUGUAA^ G AA - A- UGACCCA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Spt-Mir-193-P2b_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGGACUUUCAGGGGCAGCUGUG -23
Get sequence
|
Mature sequence | Spt-Mir-193-P2b_3p (predicted) |
mirBase accession | None |
Sequence |
40- UAAUGCCCCUAAAAAUCCUUAU -62
Get sequence
|