MirGeneDB 2.1

MirGeneDB ID

Spu-Mir-193-P2

Family name MIR-193 (all species)
Seed AAUGCCC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-193-P2b  Ami-Mir-193-P2a  Ami-Mir-193-P2b  Bge-Mir-193-P2  Bta-Mir-193-P2a  Bta-Mir-193-P2b  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2a  Cfa-Mir-193-P2b  Cgi-Mir-193-P2  Cli-Mir-193-P2a  Cli-Mir-193-P2b  Cmi-Mir-193-P2a  Cmi-Mir-193-P2b  Cpi-Mir-193-P2a  Cpi-Mir-193-P2b  Cpo-Mir-193-P2a  Cpo-Mir-193-P2b  Csc-Mir-193-P2v  Cte-Mir-193-P2  Dno-Mir-193-P2a  Dno-Mir-193-P2b  Dre-Mir-193-P2a  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2  Ebu-Mir-193-P2  Efe-Mir-193-P2c-v1  Efe-Mir-193-P2c-v2  Efe-Mir-193-P2d-v1  Efe-Mir-193-P2d-v2  Efe-Mir-193-P2e-v1  Efe-Mir-193-P2e-v2  Efe-Mir-193-P2f-v1  Efe-Mir-193-P2f-v2  Ete-Mir-193-P2a  Ete-Mir-193-P2b  Gga-Mir-193-P2a  Gga-Mir-193-P2b  Gja-Mir-193-P2b  Gmo-Mir-193-P2b2  Hme-Mir-193-P2  Hsa-Mir-193-P2a  Hsa-Mir-193-P2b  Lan-Mir-193-P2p  Lan-Mir-193-P2q  Lch-Mir-193-P2a  Lch-Mir-193-P2b  Lgi-Mir-193-P2  Loc-Mir-193-P2a  Loc-Mir-193-P2b  Lpo-Mir-193-P2n  Lpo-Mir-193-P2o  Lpo-Mir-193-P2r  Mal-Mir-193-P2b2  Mdo-Mir-193-P2a  Mml-Mir-193-P2a  Mml-Mir-193-P2b  Mmu-Mir-193-P2a  Mmu-Mir-193-P2b  Mun-Mir-193-P2a  Mun-Mir-193-P2b  Oan-Mir-193-P2a  Oan-Mir-193-P2b  Ocu-Mir-193-P2a  Ocu-Mir-193-P2b  Pbv-Mir-193-P2a  Pbv-Mir-193-P2b  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Rno-Mir-193-P2a  Rno-Mir-193-P2b  Sha-Mir-193-P2a  Sha-Mir-193-P2b  Sko-Mir-193-P2  Spt-Mir-193-P2a  Spt-Mir-193-P2b  Sto-Mir-193-P2a  Sto-Mir-193-P2b  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Tgu-Mir-193-P2b  Tni-Mir-193-P2b2  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Spur_5.0)
AAGJ06000014.1: 16475259-16475346 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUAUCGAUAACAAAAAAACGCGAGUACGUGGGGUUUUGAGGGGAUUCAUUGCGUCGAAAAAUAGAGAUCGGGCACCGUUUCGAAUCUCAACUCGUAAUGCCCCGCAAAAUCCCAAAUGCUUGUGAGUUGUACACACCGUCAUCAAC
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Structure
        10        20          30        40        50        60        70     
GAGUAUCGAUAACAAAAAAA--|       CG          A    AUU       UCGAAAAAUAGAGAUCGGG 
                      CGCGAGUA  UGGGGUUUUG GGGG   CAUUGCG                   \
                      GUGUUCGU  ACCCUAAAAC CCCC   GUAAUGC                   C
CAACUACUGCCACACAUGUUGA^       AA          G    ---       UCAACUCUAAGCUUUGCCA 
      140       130       120       110          100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-193-P2_5p*

mirBase accessionNone
Sequence
0- UGGGGUUUUGAGGGGAUUCAUUGCG -25
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Mature sequence

Spu-Mir-193-P2_3p

mirBase accessionNone
Sequence
66- UAAUGCCCCGCAAAAUCCCAAA -88
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