MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-193-P2a

Family name MIR-193 (all species)
Seed AAUGCCC
Species Human (Homo sapiens)
MiRBase ID hsa-mir-365a
Paralogues Hsa-Mir-193-P1a  Hsa-Mir-193-P1b  Hsa-Mir-193-P2b 
Orthologues Ami-Mir-193-P2a  Bge-Mir-193-P2  Bta-Mir-193-P2a  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2a  Cgi-Mir-193-P2  Cli-Mir-193-P2a  Cmi-Mir-193-P2a  Cpi-Mir-193-P2a  Cpo-Mir-193-P2a  Cte-Mir-193-P2  Dno-Mir-193-P2a  Dre-Mir-193-P2a  Ebu-Mir-193-P2  Ete-Mir-193-P2a  Gga-Mir-193-P2a  Hme-Mir-193-P2  Lch-Mir-193-P2a  Lgi-Mir-193-P2  Loc-Mir-193-P2a  Mdo-Mir-193-P2a  Mml-Mir-193-P2a  Mmu-Mir-193-P2a  Mun-Mir-193-P2a  Oan-Mir-193-P2a  Ocu-Mir-193-P2a  Pbv-Mir-193-P2a  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Rno-Mir-193-P2a  Sha-Mir-193-P2a  Sko-Mir-193-P2  Spt-Mir-193-P2a  Spu-Mir-193-P2  Sto-Mir-193-P2a  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(hg38)
chr16: 14309300-14309360 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P2a)
Mir-193-P1a chr16: 14303980-14304038 [+] UCSC Ensembl
Mir-193-P2a chr16: 14309300-14309360 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAGCUGGUUCGUUACCGCAGGGAAAAUGAGGGACUUUUGGGGGCAGAUGUGUUUCCAUUCCACUAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAGUAUUCCUCGGGGGUCCCU
Get precursor sequence
Structure
        10          20        30        40        50        60 
GCCAGCUGGUUCGUUACC--|     AA        AC           GA    UUUCCAU 
                    GCAGGG  AAUGAGGG  UUUUGGGGGCA  UGUG       \
                    CGUUCU  UUAUUCCU  AAAAUCCCCGU  AUAC       U
UCCCUGGGGGCUCCUUAUGA^     CG        A-           A-    UAUCACC 
 .       110       100        90         80         70
Deep sequencing
Go to detailed chart
CommentAlthough there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the CAGE data from de Rie et al. (2017). All other osteichthyians are treated accordingly. There is also a second Drosha cut -1 on both arms.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Star sequence

Hsa-Mir-193-P2a_5p*

mirBase accessionMIMAT0009199
Sequence
0- AGGGACUUUUGGGGGCAGAUGUG -23
Get sequence
Proposed targets microrna.org: MIMAT0009199
TargetScanVert: hsa-miR-365a-5p
TargetMiner: hsa-miR-365a-5p
miRDB: MIMAT0009199
Mature sequence

Hsa-Mir-193-P2a_3p

mirBase accessionMIMAT0000710
Sequence
40- UAAUGCCCCUAAAAAUCCUUA -61
Get sequence
Proposed targets microrna.org: MIMAT0000710
TargetScanVert: hsa-miR-365a-3p
TargetMiner: hsa-miR-365a-3p
miRDB: MIMAT0000710