MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-193-P2a

Family name MIR-193 (all species)
Seed AAUGCCC
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-365-1
Paralogues Pbv-Mir-193-P1a  Pbv-Mir-193-P1b  Pbv-Mir-193-P2b 
Orthologues Ami-Mir-193-P2a  Bge-Mir-193-P2  Bta-Mir-193-P2a  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2a  Cgi-Mir-193-P2  Cli-Mir-193-P2a  Cmi-Mir-193-P2a  Cpi-Mir-193-P2a  Cpo-Mir-193-P2a  Cte-Mir-193-P2  Dno-Mir-193-P2a  Dre-Mir-193-P2a  Ebu-Mir-193-P2  Ete-Mir-193-P2a  Gga-Mir-193-P2a  Hme-Mir-193-P2  Hsa-Mir-193-P2a  Lch-Mir-193-P2a  Lgi-Mir-193-P2  Loc-Mir-193-P2a  Mdo-Mir-193-P2a  Mml-Mir-193-P2a  Mmu-Mir-193-P2a  Mun-Mir-193-P2a  Oan-Mir-193-P2a  Ocu-Mir-193-P2a  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Rno-Mir-193-P2a  Sha-Mir-193-P2a  Sko-Mir-193-P2  Spt-Mir-193-P2a  Spu-Mir-193-P2  Sto-Mir-193-P2a  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE956029.1: 2947-3006 [+]
Clustered miRNAs
(< 50kb from Mir-193-P2a)
Mir-193-P1a KE956029.1: 171-229 [+]
Mir-193-P2a KE956029.1: 2947-3006 [+]
Precursor
(pre-Mir +30nt flank)
CAACCUGUGGCUCUUCACGCAGGGAAAAUGAGGGACUUUUGGGGGCAGCUGUGUUCUUCCAUGCUACCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCCACAUUGCAGCUGGAUCUCC
Get precursor sequence
Structure
        10          20        30        40        50        60
CAACCUGUGGCUCUUCAC--|     AA        AC           GC    UUCUUC 
                    GCAGGG  AAUGAGGG  UUUUGGGGGCA  UGUG      C
                    CGUUCU  UUAUUCCU  AAAAUCCCCGU  AUAC      A
CCUCUAGGUCGACGUUACAC^     CG        A-           A-    CAUCGU 
.       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pbv-Mir-193-P2a_5p*

mirBase accessionNone
Sequence
0- AGGGACUUUUGGGGGCAGCUGUG -23
Get sequence
Mature sequence

Pbv-Mir-193-P2a_3p

mirBase accessionMIMAT0039044
Sequence
39- UAAUGCCCCUAAAAAUCCUUA -60
Get sequence