MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-193-P2a

Family name MIR-193 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-365-1
Paralogues Dre-Mir-193-P1a  Dre-Mir-193-P1b1  Dre-Mir-193-P1b2  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2 
Orthologues Ami-Mir-193-P2a  Bge-Mir-193-P2  Bta-Mir-193-P2a  Cbr-Mir-193-P2-v1  Cel-Mir-193-P2-v1  Cfa-Mir-193-P2a  Cja-Mir-193-P2a  Cli-Mir-193-P2a  Cmi-Mir-193-P2a  Cpi-Mir-193-P2a  Cpo-Mir-193-P2a  Cte-Mir-193-P2  Dgr-Mir-193-P2  Dlo-Mir-193-P2  Dno-Mir-193-P2a  Ebu-Mir-193-P2  Eca-Mir-193-P2a  Ete-Mir-193-P2a  Gga-Mir-193-P2a  Hme-Mir-193-P2  Hru-Mir-193-P2  Hsa-Mir-193-P2a  Laf-Mir-193-P2a  Lch-Mir-193-P2a  Lgi-Mir-193-P2  Llo-Mir-193-P2-v1  Loc-Mir-193-P2a  Mdo-Mir-193-P2a  Mgi-Mir-193-P2  Mml-Mir-193-P2a  Mmr-Mir-193-P2a  Mmu-Mir-193-P2a  Mun-Mir-193-P2a  Neu-Mir-193-P2a  Oan-Mir-193-P2a  Ocu-Mir-193-P2a  Pab-Mir-193-P2a  Pau-Mir-193-P2  Pbv-Mir-193-P2a  Pdu-Mir-193-P2  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Pve-Mir-193-P2  Rno-Mir-193-P2a  Rph-Mir-193-P2  Sha-Mir-193-P2a  Sko-Mir-193-P2  Snu-Mir-193-P2  Spt-Mir-193-P2a  Spu-Mir-193-P2  Sro-Mir-193-P2  Sto-Mir-193-P2a  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr3: 43716841-43716901 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P2a)		 Mir-193-P1a chr3: 43714712-43714771 [+] UCSC Ensembl
Mir-193-P2a chr3: 43716841-43716901 [+] UCSC Ensembl
Seed AAUGCCC
Precursor
(pre-Mir +30nt flank)		 
AAGUCUAAAUGUAAAUCCGCAGGGAGAAUGAGGGGCUUUUGGGGGCACUUGUGUUUCAGUUUCACCAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCACUGAUCCCCACACAUGUUU
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Structure
        10          20        30        40        50        60 
AAGUCUAAAUGUAAAUCC--|     AG        GC           C     UUUCAGU 
                    GCAGGG  AAUGAGGG  UUUUGGGGGCA UUGUG       \
                    CGUUCU  UUAUUCCU  AAAAUCCCCGU AAUAC       U
UUUGUACACACCCCUAGUCA^     CG        A-           -     UACCACU 
 .       110       100        90         80         70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-193-P2a_5p*
mirBase accessionNone
Sequence 
0- AGGGGCUUUUGGGGGCACUUGUG -23
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Mature sequence

Dre-Mir-193-P2a_3p
mirBase accessionMIMAT0001875
Sequence 
40- UAAUGCCCCUAAAAAUCCUUA -61
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Proposed targets TargetScanFish: dre-miR-365