MirGeneDB ID | Mmu-Mir-193-P2a |
Family name |
MIR-193 (all species) |
Species |
House mouse (Mus musculus) |
MiRBase ID |
mmu-mir-365-1
|
Paralogues |
Mmu-Mir-193-P1a
Mmu-Mir-193-P1b
Mmu-Mir-193-P2b
|
Orthologues |
Ami-Mir-193-P2a
Bge-Mir-193-P2
Bta-Mir-193-P2a
Cbr-Mir-193-P2-v1
Cel-Mir-193-P2-v1
Cfa-Mir-193-P2a
Cja-Mir-193-P2a
Cli-Mir-193-P2a
Cmi-Mir-193-P2a
Cpi-Mir-193-P2a
Cpo-Mir-193-P2a
Cte-Mir-193-P2
Dgr-Mir-193-P2
Dlo-Mir-193-P2
Dno-Mir-193-P2a
Dre-Mir-193-P2a
Ebu-Mir-193-P2
Eca-Mir-193-P2a
Ete-Mir-193-P2a
Gga-Mir-193-P2a
Hme-Mir-193-P2
Hru-Mir-193-P2
Hsa-Mir-193-P2a
Laf-Mir-193-P2a
Lch-Mir-193-P2a
Lgi-Mir-193-P2
Llo-Mir-193-P2-v1
Loc-Mir-193-P2a
Mdo-Mir-193-P2a
Mgi-Mir-193-P2
Mml-Mir-193-P2a
Mmr-Mir-193-P2a
Mun-Mir-193-P2a
Neu-Mir-193-P2a
Oan-Mir-193-P2a
Ocu-Mir-193-P2a
Pab-Mir-193-P2a
Pau-Mir-193-P2
Pbv-Mir-193-P2a
Pdu-Mir-193-P2
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Pve-Mir-193-P2
Rno-Mir-193-P2a
Rph-Mir-193-P2
Sha-Mir-193-P2a
Sko-Mir-193-P2
Snu-Mir-193-P2
Spt-Mir-193-P2a
Spu-Mir-193-P2
Sro-Mir-193-P2
Sto-Mir-193-P2a
Tca-Mir-193-P2
Tgu-Mir-193-P2a
Xbo-Mir-193-P2
Xla-Mir-193-P2a3
Xla-Mir-193-P2a4
Xtr-Mir-193-P2a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (mm10) |
chr16: 13453855-13453915 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-193-P2a) |
Mir-193-P1a
chr16: 13449533-13449591 [+]
UCSC
Ensembl
Mir-193-P2a
chr16: 13453855-13453915 [+]
UCSC
Ensembl
|
Seed |
AAUGCCC |
Precursor (pre-Mir +30nt flank) |
GCCAGCUGAUUGGUUACCGCAGGGAAAAUGAGGGACUUUUGGGGGCAGAUGUGUUUCCAUUCCGCUAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAGUAUUCCUCGGGGGUCCCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCCAGCUGAUUGGUUACC--| AA AC GA UUUCCAU
GCAGGG AAUGAGGG UUUUGGGGGCA UGUG \
CGUUCU UUAUUCCU AAAAUCCCCGU AUAC U
CCCCUGGGGGCUCCUUAUGA^ CG A- A- UAUCGCC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Br |
Ce |
Ce |
Em |
Em |
He |
Ki |
Li |
Lu |
Ov |
Pa |
Sk |
Sp |
Te |
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Star sequence |
Mmu-Mir-193-P2a_5p* |
mirBase accession | MIMAT0017077 |
Sequence |
0- AGGGACUUUUGGGGGCAGAUGUG -23
Get sequence
|
Proposed targets |
TargetScanVert: mmu-miR-365-1-5p
miRDB: MIMAT0017077
|
Mature sequence |
Mmu-Mir-193-P2a_3p |
mirBase accession | MIMAT0000711 |
Sequence |
40- UAAUGCCCCUAAAAAUCCUUA -61
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000711
TargetScanVert: mmu-miR-365-3p
miRDB: MIMAT0000711
|