MirGeneDB ID | Eca-Mir-193-P2a |
Family name |
MIR-193 (all species) |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-365-2
|
Paralogues |
Eca-Mir-193-P1a
Eca-Mir-193-P1b
Eca-Mir-193-P2b
|
Orthologues |
Ami-Mir-193-P2a
Bge-Mir-193-P2
Bta-Mir-193-P2a
Cbr-Mir-193-P2-v1
Cel-Mir-193-P2-v1
Cfa-Mir-193-P2a
Cja-Mir-193-P2a
Cli-Mir-193-P2a
Cmi-Mir-193-P2a
Cpi-Mir-193-P2a
Cpo-Mir-193-P2a
Cte-Mir-193-P2
Dgr-Mir-193-P2
Dlo-Mir-193-P2
Dno-Mir-193-P2a
Dre-Mir-193-P2a
Ebu-Mir-193-P2
Ete-Mir-193-P2a
Gga-Mir-193-P2a
Hme-Mir-193-P2
Hru-Mir-193-P2
Hsa-Mir-193-P2a
Laf-Mir-193-P2a
Lch-Mir-193-P2a
Lgi-Mir-193-P2
Llo-Mir-193-P2-v1
Loc-Mir-193-P2a
Mdo-Mir-193-P2a
Mgi-Mir-193-P2
Mml-Mir-193-P2a
Mmr-Mir-193-P2a
Mmu-Mir-193-P2a
Mun-Mir-193-P2a
Neu-Mir-193-P2a
Oan-Mir-193-P2a
Ocu-Mir-193-P2a
Pab-Mir-193-P2a
Pau-Mir-193-P2
Pbv-Mir-193-P2a
Pdu-Mir-193-P2
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Pve-Mir-193-P2
Rno-Mir-193-P2a
Rph-Mir-193-P2
Sha-Mir-193-P2a
Sko-Mir-193-P2
Snu-Mir-193-P2
Spt-Mir-193-P2a
Spu-Mir-193-P2
Sro-Mir-193-P2
Sto-Mir-193-P2a
Tca-Mir-193-P2
Tgu-Mir-193-P2a
Xbo-Mir-193-P2
Xla-Mir-193-P2a3
Xla-Mir-193-P2a4
Xtr-Mir-193-P2a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009160.1: 31845868-31845928 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-193-P2a) |
Mir-193-P2a
CM009160.1: 31845868-31845928 [-]
UCSC
Ensembl
Mir-193-P1a
CM009160.1: 31850711-31850769 [-]
UCSC
Ensembl
|
Seed |
AAUGCCC |
Precursor (pre-Mir +30nt flank) |
CCCGGCUGGCUCGUUACCGCAGGGAAAAUGAGGGACUUUUGGGGGCAGAUGUGUUUCCAUUCCACUAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAGUAUUCUUCGGGGGUCCCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCGGCUGGCUCGUUACC--| AA AC GA UUUCCAU
GCAGGG AAUGAGGG UUUUGGGGGCA UGUG \
CGUUCU UUAUUCCU AAAAUCCCCGU AUAC U
UCCCUGGGGGCUUCUUAUGA^ CG A- A- UAUCACC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-193-P2a_5p* |
mirBase accession | None |
Sequence |
0- AGGGACUUUUGGGGGCAGAUGUG -23
Get sequence
|
Mature sequence |
Eca-Mir-193-P2a_3p |
mirBase accession | MIMAT0013038 |
Sequence |
40- UAAUGCCCCUAAAAAUCCUUA -61
Get sequence
|