MirGeneDB 3.0
MirGeneDB ID

Lgi-Mir-193-P2

Family name MIR-193 (all species)
Species Owl limpet (Lottia gigantea)
MiRBase ID
Paralogues Lgi-Mir-193-P1 
Orthologues Aca-Mir-193-P2b  Ami-Mir-193-P2a  Ami-Mir-193-P2b  Bge-Mir-193-P2  Bta-Mir-193-P2a  Bta-Mir-193-P2b  Cbr-Mir-193-P2-v1  Cel-Mir-193-P2-v1  Cfa-Mir-193-P2a  Cfa-Mir-193-P2b  Cja-Mir-193-P2a  Cja-Mir-193-P2b  Cli-Mir-193-P2a  Cli-Mir-193-P2b  Cmi-Mir-193-P2a  Cmi-Mir-193-P2b  Cpi-Mir-193-P2a  Cpi-Mir-193-P2b  Cpo-Mir-193-P2a  Cpo-Mir-193-P2b  Csc-Mir-193-P2v  Cte-Mir-193-P2  Dgr-Mir-193-P2  Dlo-Mir-193-P2  Dno-Mir-193-P2a  Dno-Mir-193-P2b  Dre-Mir-193-P2a  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2  Ebu-Mir-193-P2  Eca-Mir-193-P2a  Eca-Mir-193-P2b  Efe-Mir-193-P2c-v1  Efe-Mir-193-P2d-v1  Efe-Mir-193-P2e-v1  Efe-Mir-193-P2f-v1  Ete-Mir-193-P2a  Ete-Mir-193-P2b  Gga-Mir-193-P2a  Gga-Mir-193-P2b  Gja-Mir-193-P2b  Gmo-Mir-193-P2b2  Hme-Mir-193-P2  Hru-Mir-193-P2  Hsa-Mir-193-P2a  Hsa-Mir-193-P2b  Laf-Mir-193-P2a  Laf-Mir-193-P2b  Lan-Mir-193-P2p  Lan-Mir-193-P2q  Lch-Mir-193-P2a  Lch-Mir-193-P2b  Llo-Mir-193-P2-v1  Loc-Mir-193-P2a  Loc-Mir-193-P2b  Lpo-Mir-193-P2n  Lpo-Mir-193-P2o  Lpo-Mir-193-P2r  Mal-Mir-193-P2b2  Mdo-Mir-193-P2a  Mgi-Mir-193-P2  Mml-Mir-193-P2a  Mml-Mir-193-P2b  Mmr-Mir-193-P2a  Mmr-Mir-193-P2b  Mmu-Mir-193-P2a  Mmu-Mir-193-P2b  Mun-Mir-193-P2a  Mun-Mir-193-P2b  Neu-Mir-193-P2a  Neu-Mir-193-P2b  Oan-Mir-193-P2a  Oan-Mir-193-P2b  Ocu-Mir-193-P2a  Ocu-Mir-193-P2b  Pab-Mir-193-P2a  Pab-Mir-193-P2b  Pau-Mir-193-P2  Pbv-Mir-193-P2a  Pbv-Mir-193-P2b  Pdu-Mir-193-P2  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Pve-Mir-193-P2  Rno-Mir-193-P2a  Rno-Mir-193-P2b  Rph-Mir-193-P2  Sha-Mir-193-P2a  Sha-Mir-193-P2b  Sko-Mir-193-P2  Snu-Mir-193-P2  Spt-Mir-193-P2a  Spt-Mir-193-P2b  Spu-Mir-193-P2  Sro-Mir-193-P2  Sto-Mir-193-P2a  Sto-Mir-193-P2b  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Tgu-Mir-193-P2b  Tni-Mir-193-P2b2  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Lotgi1)		 LOTGIsca_31: 1573998-1574056 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P2)		 Mir-193-P1 LOTGIsca_31: 1568891-1568950 [+] Ensembl
Mir-193-P2 LOTGIsca_31: 1573998-1574056 [+] Ensembl
Seed AAUGCCC
Precursor
(pre-Mir +30nt flank)		 
UCCCAAUUCAACGGAUUAUUGUGAUUAUCAUGGGAUAAUUGGUCGGCAUUGUGGUGUAAUUGAUGUAUAAUGCCCCCAAUUAUACCAACAUAUAUCAUAAUGUAUACAUUGUUUUAAAA
Get precursor sequence
Structure
        10         20        30         40        50         
UCCCAAUUCAACGGAUU-        UAUCA-|  G        UC         GUGUA 
                  AUUGUGAU      UGG AUAAUUGG  GGCAUUGUG     A
                  UAAUACUA      ACC UAUUAACC  CCGUAAUAU     U
AAAAUUUUGUUACAUAUG        UAUACA^  A        C-         GUAGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
To
Star sequence

Lgi-Mir-193-P2_5p*
mirBase accessionNone
Sequence 
0- UGGGAUAAUUGGUCGGCAUUGUG -23
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Mature sequence

Lgi-Mir-193-P2_3p
mirBase accessionNone
Sequence 
37- UAAUGCCCCCAAUUAUACCAAC -59
Get sequence