MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-193-P2

Family name MIR-193 (all species)
Seed AAUGCCC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-193-P1 
Orthologues Aca-Mir-193-P2b  Ami-Mir-193-P2a  Ami-Mir-193-P2b  Bge-Mir-193-P2  Bta-Mir-193-P2a  Bta-Mir-193-P2b  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2a  Cfa-Mir-193-P2b  Cgi-Mir-193-P2  Cli-Mir-193-P2a  Cli-Mir-193-P2b  Cmi-Mir-193-P2a  Cmi-Mir-193-P2b  Cpi-Mir-193-P2a  Cpi-Mir-193-P2b  Cpo-Mir-193-P2a  Cpo-Mir-193-P2b  Csc-Mir-193-P2v  Cte-Mir-193-P2  Dno-Mir-193-P2a  Dno-Mir-193-P2b  Dre-Mir-193-P2a  Dre-Mir-193-P2b1  Dre-Mir-193-P2b2  Ebu-Mir-193-P2  Efe-Mir-193-P2c-v1  Efe-Mir-193-P2c-v2  Efe-Mir-193-P2d-v1  Efe-Mir-193-P2d-v2  Efe-Mir-193-P2e-v1  Efe-Mir-193-P2e-v2  Efe-Mir-193-P2f-v1  Efe-Mir-193-P2f-v2  Ete-Mir-193-P2a  Ete-Mir-193-P2b  Gga-Mir-193-P2a  Gga-Mir-193-P2b  Gja-Mir-193-P2b  Gmo-Mir-193-P2b2  Hme-Mir-193-P2  Hsa-Mir-193-P2a  Hsa-Mir-193-P2b  Lan-Mir-193-P2p  Lan-Mir-193-P2q  Lch-Mir-193-P2a  Lch-Mir-193-P2b  Lgi-Mir-193-P2  Loc-Mir-193-P2a  Loc-Mir-193-P2b  Lpo-Mir-193-P2n  Lpo-Mir-193-P2o  Lpo-Mir-193-P2r  Mal-Mir-193-P2b2  Mdo-Mir-193-P2a  Mml-Mir-193-P2a  Mml-Mir-193-P2b  Mmu-Mir-193-P2a  Mmu-Mir-193-P2b  Mun-Mir-193-P2a  Mun-Mir-193-P2b  Oan-Mir-193-P2a  Oan-Mir-193-P2b  Ocu-Mir-193-P2a  Ocu-Mir-193-P2b  Pbv-Mir-193-P2a  Pbv-Mir-193-P2b  Pfl-Mir-193-P2  Pmi-Mir-193-P2  Rno-Mir-193-P2a  Rno-Mir-193-P2b  Sha-Mir-193-P2a  Sha-Mir-193-P2b  Sko-Mir-193-P2  Spt-Mir-193-P2a  Spt-Mir-193-P2b  Spu-Mir-193-P2  Sto-Mir-193-P2a  Sto-Mir-193-P2b  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Tgu-Mir-193-P2b  Tni-Mir-193-P2b2  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046126.1: 4954419-4954480 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGGUCAUCAAGAGAAUGCAGGAAAAAUGAAGGAGCUUUGGGGGCAUGUAUGUCCCACUUUGUCAAUCAUAAUGCCCCUAAAAAUCCUUAAUGCUUCUUGCAGAUAACGCCAGAGUCACGG
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Structure
        10          20        30        40        50        60 
GGGGGUCAUCAAGAGAA--|       AA  G     GC           G    UCCCACU 
                   UGCAGGAA  AU AAGGA  UUUGGGGGCAU UAUG       \
                   ACGUUCUU  UA UUCCU  AAAUCCCCGUA AUAC       U
GGCACUGAGACCGCAAUAG^       CG  A     AA           -    UAACUGU 
120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-193-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- AAGGAGCUUUGGGGGCAUGUAUG -23
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Mature sequence

Pma-Mir-193-P2_3p

mirBase accessionNone
Sequence
40- UAAUGCCCCUAAAAAUCCUUAA -62
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