| MirGeneDB ID | Cmi-Mir-193-P2a |
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| Family name |
MIR-193 (all species) |
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| Seed |
AAUGCCC |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
|
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| Paralogues |
Cmi-Mir-193-P1a
Cmi-Mir-193-P1b
Cmi-Mir-193-P2b
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| Orthologues |
Ami-Mir-193-P2a
Bge-Mir-193-P2
Bta-Mir-193-P2a
Cbr-Mir-193-P2-v1
Cbr-Mir-193-P2-v2
Cel-Mir-193-P2-v1
Cel-Mir-193-P2-v2
Cfa-Mir-193-P2a
Cgi-Mir-193-P2
Cli-Mir-193-P2a
Cpi-Mir-193-P2a
Cpo-Mir-193-P2a
Cte-Mir-193-P2
Dno-Mir-193-P2a
Dre-Mir-193-P2a
Ebu-Mir-193-P2
Ete-Mir-193-P2a
Gga-Mir-193-P2a
Hme-Mir-193-P2
Hsa-Mir-193-P2a
Lch-Mir-193-P2a
Lgi-Mir-193-P2
Loc-Mir-193-P2a
Mdo-Mir-193-P2a
Mml-Mir-193-P2a
Mmu-Mir-193-P2a
Mun-Mir-193-P2a
Oan-Mir-193-P2a
Ocu-Mir-193-P2a
Pbv-Mir-193-P2a
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Rno-Mir-193-P2a
Sha-Mir-193-P2a
Sko-Mir-193-P2
Spt-Mir-193-P2a
Spu-Mir-193-P2
Sto-Mir-193-P2a
Tca-Mir-193-P2
Tgu-Mir-193-P2a
Xbo-Mir-193-P2
Xla-Mir-193-P2a3
Xla-Mir-193-P2a4
Xtr-Mir-193-P2a
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Bilateria
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636017.1: 2193-2253 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUAUCACUCUCCUAUUCCGCAGGGAAAAUGAGGGACUUUUGGGGGCAGGUGUGUUUCAGCUGCAUAAUCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAGUAAUCAUCUGUGUUACAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUAUCACUCUCCUAUUCC--| A AC GG UUUCAGC
GCAGGGA AAUGAGGG UUUUGGGGGCA UGUG \
CGUUCUU UUAUUCCU AAAAUCCCCGU AUAC U
AACAUUGUGUCUACUAAUGA^ G A- A- UAAUACG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-193-P2a_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGACUUUUGGGGGCAGGUGUG -23
Get sequence
|
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| Mature sequence |
Cmi-Mir-193-P2a_3p |
| mirBase accession | None |
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| Sequence |
40- UAAUGCCCCUAAAAAUCCUUA -61
Get sequence
|
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